PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01677.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 325aa    MW: 35799 Da    PI: 8.573
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01677.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.4e-32183238156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+
  Rsa1.0_01677.1_g00004.1 183 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 238
                              79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.55E-18180241IPR009057Homeodomain-like
PROSITE profilePS5129415.086180240IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-28181241IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26183238IPR006447Myb domain, plants
PfamPF002494.9E-8185236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQRCHEYVEA LKEEQKKIQV FQRELPLCLE LVTQAIEACK KELSGTSTTS SEQCNSEQTA  60
SVCGGPVLEE FIPIKKSNDG EHESPREIEK SDVDSKKSDW LRSAHLWNHS PDPDTTVVAE  120
VAAAKKARVV EVKPNSNNRC GFQPFQKETK RVFPEPEPEP APAPAATTCS TTGREQQSQT  180
HRKQRRCWSP ELHRRFLHAL QQLGGSHVAT PKQIRDHMKV DGLTNDEVKS HLQKYRLHTR  240
RPATAQGNGN SQQPQFVVVG GIWVPSPQDF PPPSNVANSS GGVCTPVTAQ PPKSPKRSVE  300
RSSGRCNSPA ASSSTNTTTT SSPVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01677.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0638861e-64AY063886.1 Arabidopsis thaliana unknown protein (At1g68670) mRNA, complete cds.
GenBankAY0879931e-64AY087993.1 Arabidopsis thaliana clone 40196 mRNA, complete sequence.
GenBankAY0912411e-64AY091241.1 Arabidopsis thaliana unknown protein (At1g68670) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457610.10.0PREDICTED: myb family transcription factor EFM-like isoform X1
SwissprotQ8VZS31e-135HHO2_ARATH; Transcription factor HHO2
TrEMBLA0A3P6H1A61e-162A0A3P6H1A6_BRAOL; Uncharacterized protein
STRINGBo6g107160.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.11e-123G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]
  2. Sun X, et al.
    The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides.
    J. Exp. Bot., 2018. 69(7): p. 1749-1764
    [PMID:29385617]