PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01656.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 302aa    MW: 34265.6 Da    PI: 6.2303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01656.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161663148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W +eEd++l+ +++++G  +W++ ++  g++R++k+c++rw +yl
  Rsa1.0_01656.1_g00002.1 16 KGPWLPEEDDKLISYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 63
                             79********************************************97 PP

2Myb_DNA-binding55.51.3e-1769114148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
  Rsa1.0_01656.1_g00002.1  69 RGKFSQEEEETILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 114
                              89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.031163IPR017930Myb domain
SuperFamilySSF466891.24E-2914110IPR009057Homeodomain-like
SMARTSM007178.4E-141565IPR001005SANT/Myb domain
PfamPF002493.9E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241770IPR009057Homeodomain-like
CDDcd001671.11E-101863No hitNo description
PROSITE profilePS5129427.24764118IPR017930Myb domain
SMARTSM007171.7E-1668116IPR001005SANT/Myb domain
PfamPF002491.7E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2871119IPR009057Homeodomain-like
CDDcd001672.73E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRRSPLSADE TGSLKKGPWL PEEDDKLISY IHKHGHSSWS ALPKLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSQEEEETI LNLHAVLGNK WSMIASHLPG RTDNEIKNFW NTHLKKKLIQ  120
MGFDPMTHRP RTDDIFSSLS QLMSLSNLRG LVDLQQQVPF EDQQALLNLQ AEMTKLQLLN  180
YLLQPPPLAM SSSNNINPSE LNILNLLTKE NYNTNNLDLS FLNLPSLKTL EENHLSQNNS  240
PIWSHEPPSL NQTMLPSHDP SPLGDDLALN QASSSHEQEA AATGSVDWPD HLFDDSMFPY  300
QS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29141185108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01656.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196461e-177AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492161.10.0PREDICTED: transcription factor MYB39
SwissprotQ9FJP21e-154MYB53_ARATH; Transcription factor MYB53
TrEMBLM4E6G40.0M4E6G4_BRARP; Uncharacterized protein
STRINGBra024368.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-138myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]