PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01651.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 318aa    MW: 34730.6 Da    PI: 6.6057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01651.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10256298652
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                              +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik
  Rsa1.0_01651.1_g00001.1 256 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIK 298
                              689*********************7....688**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.205250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-11253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-9254298No hitNo description
Gene3DG3DSA:4.10.280.101.2E-9255301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-7256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7256298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MYPSSSSKST VPDGGDADNN GYDSAAGATR DFSSLGSQTQ YNPPPPPRQQ HNPNVVGLGD  60
YFSSGDPSTI GFDPGASSSS PLFRHRSSPA GFYDQHLPTD PNGPNGGYGG GGERGPSRLK  120
PELRFSGGSS SSHQERSSLP RITEVEAAAT AVKGVASTSM TFGNDHNNWD NSSSHISFTI  180
DEPGKRSKTT DFFTLETQFV EVWRKFMIDL CMILQVFSMP QTSLEVARME SMMNIPEDSV  240
PCRARAKRGC ATHPRSIAER ERRTRISGKL KKLQELVPNM DKQTSYADML DLAVEHIKVA  300
EKGDGEMHLW GMQEAMMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01651.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434880.11e-180PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-126BH129_ARATH; Transcription factor bHLH129
TrEMBLM4CKL31e-150M4CKL3_BRARP; Uncharacterized protein
STRINGXP_010506173.11e-151(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.11e-103bHLH family protein