PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01640.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 171aa    MW: 19433.6 Da    PI: 5.1032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01640.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-202068355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++aa++ l+g
  Rsa1.0_01640.1_g00001.1 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDAAALHLRG 68
                             9****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-131968IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-311977IPR001471AP2/ERF domain
PROSITE profilePS5103223.421976IPR001471AP2/ERF domain
SMARTSM003803.1E-351982IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-222077IPR016177DNA-binding domain
CDDcd000185.87E-192078No hitNo description
PRINTSPR003672.4E-102031IPR001471AP2/ERF domain
PRINTSPR003672.4E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MENNHFDQRE ERLSVDQVSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
AAALHLRGRG THLNFPELAD SFPRPESSSS EAVQAAAQEA SLMFKPGGST EPDIGSGQGL  120
SRVGLSPDQI QAITEFPLDS PRMGWMHDLE VNDYEELYRR YFGQCDRAEF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162081668ATERF1
3gcc_A2e-162081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01640.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449841.11e-125PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ283e-90ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A3P6G2N11e-109A0A3P6G2N1_BRAOL; Uncharacterized protein
STRINGBo8g027240.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.15e-80ERF family protein