PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01629.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 392aa MW: 45315.4 Da PI: 6.2301 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.6 | 1.4e-54 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik++d+yk+ePwdL + k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+W Rsa1.0_01629.1_g00002.1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDIDLYKIEPWDLLElcKIGHEEQsDWYFFSHKDKKYPTGTRTNRATKAGFW 91 69****************************.99**************7434554444459************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 katg+dk+++ +++l+g++ktLvfy grap+g+k+dW+mheyrle Rsa1.0_01629.1_g00002.1 92 KATGRDKAIYL-RHSLIGMRKTLVFYMGRAPNGQKSDWIMHEYRLE 136 ***********.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-60 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.522 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLLELCKIGH 60 EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHSLIGMR KTLVFYMGRA 120 PNGQKSDWIM HEYRLETDEN GIPQEEGWVV CRVFKKRLPA VIRRMGDYDS SPSHWYDDQL 180 SFMASELETN GPRRLIPNHH QQHQQPLPYG LNASAYALNS PNLQCKQELE LQYNHLVQHH 240 HFLHESNLSP LQLPQFESSK IQLDNINCNS LSCGTSNNVN NSTDLANLQQ SNLPHEEQLN 300 QGNHSFSSLY MNGGNEQTME KVTDWRALDK FVASQLSNDE ADTASASLQN NAKDTSNLEH 360 QVDEEKDQKR VSDMGEEYAA STSSSCQIDL WK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-50 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01629.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029761 | 0.0 | BT029761.1 Arabidopsis thaliana At1g12260 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018432728.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like isoform X1 | ||||
Swissprot | Q9FWX2 | 0.0 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A3P6GGN6 | 0.0 | A0A3P6GGN6_BRAOL; Uncharacterized protein | ||||
STRING | AT1G12260.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2111 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 0.0 | NAC 007 |
Publications ? help Back to Top | |||
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