PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01609.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 40844.8 Da PI: 7.4981 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++++++ g + R++k+c++rw +yl Rsa1.0_01609.1_g00009.1 14 RGLWSPEEDEKLINYINTYGHGCWSSVPKHAGiyigfvcLQRCGKSCRLRWINYL 68 788**************************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 74 | 116 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ Rsa1.0_01609.1_g00009.1 74 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 116 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 6 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.467 | 9 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.41E-28 | 11 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 13 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 14 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.28E-12 | 17 | 68 | No hit | No description |
PROSITE profile | PS51294 | 25.209 | 69 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 72 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 74 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-11 | 76 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN TYGHGCWSSV PKHAGIYIGF VCLQRCGKSC 60 RLRWINYLRP DLKRGSFSPQ EAALIIELHS ILGNRWAQIA KHLPGRTDNE VKNFWNSSIK 120 KKLMSHHYHH HHGHHHHHTS SMASLLTNLP YHNVFNATAG DDEGSRFMSS IITNTNPNFI 180 TPTHLPLPSH HVMSPLMFST SREGDIKYLT ATNTNQSHQD NNLYTNLDIL SATPFINNHH 240 HHHDNDPQWP SLPDLPASTI STFHDNLQDY DDGDKLNVFV TPYNDNGDPR SFPLVATKLI 300 CGQVLEGKAI SQDHGSFLLP TTYNLEMPGD HRRVDSYINH MIIPSSSSSS SPISCGQYVI 360 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-31 | 14 | 123 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01609.1_g00009.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175997 | 0.0 | AF175997.1 Arabidopsis thaliana putative transcription factor (MYB26) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434802.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
Refseq | XP_018437945.1 | 0.0 | PREDICTED: transcription factor MYB26 | ||||
Swissprot | Q9SPG3 | 1e-177 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A3P6FZQ1 | 0.0 | A0A3P6FZQ1_BRAOL; Uncharacterized protein | ||||
STRING | Bra021515.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12803 | 19 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.1 | 1e-160 | myb domain protein 26 |
Publications ? help Back to Top | |||
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