PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01603.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 351aa    MW: 38414.2 Da    PI: 8.4299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01603.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.3e-54171441128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeelvv+yLk+kv++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkat
  Rsa1.0_01603.1_g00006.1  17 LPPGFRFHPTDEELVVHYLKRKVASAPLPV-AIIAEVDLYKFDPWELPAKASFGEREWYFFSPRDRKYPNGARPNRAATSGYWKAT 101
                              79****************************.88***************999999******************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk+vl++ ++++vg+kk Lvfy+g+ pkg+k+dW+mheyr+
  Rsa1.0_01603.1_g00006.1 102 GTDKPVLASdGKQKVGVKKALVFYSGKPPKGVKSDWIMHEYRI 144
                              *******9967788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-6512178IPR003441NAC domain
PROSITE profilePS5100562.15917178IPR003441NAC domain
PfamPF023652.9E-2818144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MESIESSGGP TPPQPNLPPG FRFHPTDEEL VVHYLKRKVA SAPLPVAIIA EVDLYKFDPW  60
ELPAKASFGE REWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLAS DGKQKVGVKK  120
ALVFYSGKPP KGVKSDWIMH EYRIIDNKPN YRPPACDFAN KNSSLRLDDW VLCRIYKKNN  180
ASRHVDNDKD EGMIDYIFRK VPPSSSSGLH HNVSRSMNIF PGKSSGGYGI FSDGDSGLYD  240
GSSMVCSNGA GSVNVNVSNG NPNGLNPATS SGPMMMMANL KRALSPVAEE EQDASPSKRF  300
HCVGGGDCLN MSSSVMEETP PLMHQQGGVL GDDGLLRTAS YQLPGLNWYS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-741418314170NO APICAL MERISTEM PROTEIN
1ut4_B5e-741418314170NO APICAL MERISTEM PROTEIN
1ut7_A5e-741418314170NO APICAL MERISTEM PROTEIN
1ut7_B5e-741418314170NO APICAL MERISTEM PROTEIN
4dul_A5e-741418314170NAC domain-containing protein 19
4dul_B5e-741418314170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01603.1_g00006.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490713.10.0PREDICTED: NAC transcription factor 56-like isoform X1
SwissprotQ9LD440.0NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A3P5ZNP00.0A0A3P5ZNP0_BRACM; Uncharacterized protein
STRINGBo3g066880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-175NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]