PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01591.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 224aa MW: 24680.8 Da PI: 7.2317 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.4 | 1e-30 | 86 | 139 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Rsa1.0_01591.1_g00018.1 86 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 139 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.7E-20 | 83 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 83 | 142 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-31 | 85 | 144 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-24 | 87 | 139 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.1E-8 | 89 | 138 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MREDDSDWFS RWEQDLPSPD ELIPLSQSLI SPDLALAFDI RTPSQPPHHH QSSTPFTPSQ 60 ANSSAEFAAD SSDLAAGDEP ARTLKRPRLV WTPQLHKRFV DAVAHLGIKN AVPKTIMQLM 120 SVDGLTRENV ASHLQKYRLY LKRMQGLSSG GSDPAADRLF ASSPVPAHFL HPNRSDHFMP 180 SFVPIATLQQ QQQMVAAAAA AAASPPHLQP PQFHHRQIAA AHFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-32 | 86 | 142 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01591.1_g00018.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486345.1 | 1e-161 | PREDICTED: transcription factor PCL1 | ||||
Swissprot | O22210 | 1e-66 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A0D3CLC9 | 1e-125 | A0A0D3CLC9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g137150.1 | 1e-126 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 4e-97 | G2-like family protein |
Publications ? help Back to Top | |||
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