PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01580.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 304aa    MW: 34279.2 Da    PI: 4.7897
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01580.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20162212255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g++++eIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  Rsa1.0_01580.1_g00003.1 162 HYRGVRQRP-WGKFASEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 212
                              7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-33161221IPR001471AP2/ERF domain
SMARTSM003802.1E-37162226IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-22162222IPR016177DNA-binding domain
PROSITE profilePS5103224.026162220IPR001471AP2/ERF domain
CDDcd000183.83E-32162220No hitNo description
PfamPF008475.4E-14162212IPR001471AP2/ERF domain
PRINTSPR003671.2E-10163174IPR001471AP2/ERF domain
PRINTSPR003671.2E-10186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MANSSEVSSA LWFIEKHLLD VASPVATDRR TIHESASTES SSDSSSIIFR SSAPVDLSES  60
EIKPEIIDLS TPRFMDLIST PFEFDTHVSV SDFDFKPTFQ TGNQFEPEFK TQIPCASSSD  120
DSNSNRKPPL KISVPTKTEW IQFNPQPEVT KPVQPEAEEQ RHYRGVRQRP WGKFASEIRD  180
PNKRGSRIWL GTFDTAIEAA RAYDEAAFRL RGSKAILNFP LEVGKWKSRF DDADGEKKRK  240
RDEIDDEDVA VVEKVLKTEQ SVNGNEACKL TELCDWDLTG FLNFPLLSPL SPHPSFGYSQ  300
LTVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-30161223163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-30161223466ATERF1
3gcc_A4e-30161223466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01580.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834940.0AC183494.1 Brassica oleracea Contig C, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478145.10.0PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803411e-140EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0D3D9T20.0A0A0D3D9T2_BRAOL; Uncharacterized protein
TrEMBLQ2A9R30.0Q2A9R3_BRAOL; Ethylene responsive element binding factor
STRINGBo7g077410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-101ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]