PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01551.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 202aa    MW: 22145.1 Da    PI: 10.1063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01551.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-213079255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa+++++g
  Rsa1.0_01551.1_g00002.1 30 RFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAAREFRG 79
                             69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-373093IPR001471AP2/ERF domain
CDDcd000188.15E-203087No hitNo description
PfamPF008472.2E-143079IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-323087IPR001471AP2/ERF domain
PROSITE profilePS5103224.1313087IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-223187IPR016177DNA-binding domain
PRINTSPR003672.9E-113142IPR001471AP2/ERF domain
PRINTSPR003672.9E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAPPKQSNAS NTAIGEGSGR GCKTMTKEVR FRGVRKRPWG RYAAEIRDPG KKTRVWLGTF  60
DTAEEAARAY DAAAREFRGS KAKTNFPRPG ESPASDGNGS FNNLSSEMTT TCDMTRRIEM  120
VGSFPFACHR QNIVSSGLPP NVTGFFLDPS RAAALRVELS QVYPVQFDPV NIELSIGIPR  180
TVQIKPRTEL NLDLNLAPPL DV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2030871472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01551.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325541e-105AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437782.11e-148PREDICTED: ethylene-responsive transcription factor 9
SwissprotQ9FE671e-84ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A3P6D1L71e-116A0A3P6D1L7_BRAOL; Uncharacterized protein
STRINGBra036016.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-65erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]