PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01547.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 1270aa MW: 141489 Da PI: 4.7855

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01547.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.4	4.4e-12	96	195	3	99
EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 k lt+sd l + ++v k+ a ++ + ++ l+lede+g+ W ++++y + s+ y +t+ W+++vk+++L gDfv Rsa1.0_01547.1_g00002.1 96 KYLTTSDDLHR-LVVTAKEEAGKYfpfatvlR--S-TTNSLQLEDEEGKPWMFEFSYLRVSQIYEFTEAWSSYVKEKQLGIGDFVF 177 66777777765.36667777888888887432..2.3447********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 ++ ++++ +l ++++r+ Rsa1.0_01547.1_g00002.1 178 IRPHRTDISKLSIGFIRR 195 997766777778887775 PP
2	zf-CCCH	22.3	2.3e-07	1123	1148	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++rtG+C+ G+ C+ H+ Rsa1.0_01547.1_g00002.1 1123 PGQPVCTSYFRTGICSKGPACSSDHP 1148 57899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-14	85	184	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.95E-9	93	194	No hit	No description
SuperFamily	SSF101936	1.57E-8	112	184	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.7E-9	115	195	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.698	132	196	IPR003340	B3 DNA binding domain
SMART	SM00255	0.0053	371	508	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	9.2E-17	385	535	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52200	4.71E-10	413	505	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	5.57E-39	544	789	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	2.4E-5	550	697	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	2.6E-16	550	747	IPR002182	NB-ARC
PRINTS	PR00364	2.4E-20	563	578	No hit	No description
PRINTS	PR00364	2.4E-20	639	653	No hit	No description
PRINTS	PR00364	2.4E-20	730	744	No hit	No description
Gene3D	G3DSA:3.40.50.300	1.1E-5	817	868	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52058	4.08E-29	892	1111	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.2E-23	893	1108	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	4.8E-10	953	971	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	2.4E-20	1043	1059	No hit	No description
PROSITE profile	PS50103	11.15	1122	1150	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-5	1124	1148	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1270 aa Download sequence Send to blast
MEAFCEFLTS RQPPRSLSGS TADDALEFLR SLPSHRIVQV VESINAASFK EMDEDHKENP 60 FNSPLVRTFL DEQIGEKKLN ITRGQHDHEK DNLCEKYLTT SDDLHRLVVT AKEEAGKYFP 120 FATVLRSTTN SLQLEDEEGK PWMFEFSYLR VSQIYEFTEA WSSYVKEKQL GIGDFVFIRP 180 HRTDISKLSI GFIRRGNNSV ASLHTDCLLF EDPAPLTMSI GDGGAALQLN PCQDPVPPPV 240 IPVTALQPNY SQCHDPAPPT TSFVDGGAVF QQDYLPTDDP APLTMSIEDG GAVLQQDYLL 300 ADDTAPLTMS IGDGGASLPS DCLQEPAPPT MSHGEGGAAP TDCIYLLPED SVTSSETLEQ 360 PRFTGYSITG VDPILVISCG YNQDSEERYF TSYIFNEFRL RGFSPLSYDL STSPVDGNQD 420 LLNKSQLGII IFSMNYVSSR ECMDGFVALM DHSKANDLVL YHVFFEVEFC NVKDQTGSFG 480 KAFAQLENSV QASQVLKWKA AVKELTSTDR YHQYKKGEEV ILAKSIVRDV QVNSKTGSNL 540 TVSPQLSHIL SLLNSSQSSS PHIVGLWGMA GIGKTTFSRE IFRTQGERYD VCYFLPDFHL 600 SCQTKGLNPL REEFLSKIFG EEKVFIDACG TKLSFTRDRF RGKKVLIVLD GVSSARDAEV 660 LVGGFGWFSG GHTIILTSRN RQVLVQCNAK EIYEIKKLSE SDSIHLCREF ATGKNWKVRM 720 SLIKELVNYA SGNPLALRVL CSSIQKQCLS DEEEHLSILP HHPPIEICDA FGGIFSELDD 780 NEKNTFLDLA CFFKGENKDH VVNILDGCGF LTDLGISGLI DESLISLVDN RIEMPNIFQE 840 MGRFVVRHEH EEAGKRSRLS DSNDIVDVLT NNSGTELIEG VFLDASGLKL KLSSNVFEEM 900 DRLRLLKLHY PTSEDDCKVS LPEGLLSLPD ELRLLHWERY PLESLPENFN PENLVELNMP 960 YSNLTKLWEG TENLEMLKRI ILSHSRRLTD FSWLSKATNV EHIDLEGCTS LVEVNSSSIL 1020 HHRKLTFLSL KDCSHLRIMP TTVHLESLEV LNLSGCSELE HLEDFSPNLT EIYLAGTAIK 1080 EIPSSIVALT RLVTLDLENC NRLQHLPAEI NEKAVVGFTQ SQPGQPVCTS YFRTGICSKG 1140 PACSSDHPTL STHKNTSSIA SETQVHVELF HVLTHENPSS NNLEEVSTKK PRIHRTTSFV 1200 TSGTLDLNED EDGSSVTYGT LDLNQQENGF SFFNQPESPL GASLSDFSRG GRSNQGFQIF 1260 GVTVICKPNN

Sequence ? help Back to Top

Protein Sequence Length: 1270 aa Download sequence Send to blast

MEAFCEFLTS RQPPRSLSGS TADDALEFLR SLPSHRIVQV VESINAASFK EMDEDHKENP  60
FNSPLVRTFL DEQIGEKKLN ITRGQHDHEK DNLCEKYLTT SDDLHRLVVT AKEEAGKYFP  120
FATVLRSTTN SLQLEDEEGK PWMFEFSYLR VSQIYEFTEA WSSYVKEKQL GIGDFVFIRP  180
HRTDISKLSI GFIRRGNNSV ASLHTDCLLF EDPAPLTMSI GDGGAALQLN PCQDPVPPPV  240
IPVTALQPNY SQCHDPAPPT TSFVDGGAVF QQDYLPTDDP APLTMSIEDG GAVLQQDYLL  300
ADDTAPLTMS IGDGGASLPS DCLQEPAPPT MSHGEGGAAP TDCIYLLPED SVTSSETLEQ  360
PRFTGYSITG VDPILVISCG YNQDSEERYF TSYIFNEFRL RGFSPLSYDL STSPVDGNQD  420
LLNKSQLGII IFSMNYVSSR ECMDGFVALM DHSKANDLVL YHVFFEVEFC NVKDQTGSFG  480
KAFAQLENSV QASQVLKWKA AVKELTSTDR YHQYKKGEEV ILAKSIVRDV QVNSKTGSNL  540
TVSPQLSHIL SLLNSSQSSS PHIVGLWGMA GIGKTTFSRE IFRTQGERYD VCYFLPDFHL  600
SCQTKGLNPL REEFLSKIFG EEKVFIDACG TKLSFTRDRF RGKKVLIVLD GVSSARDAEV  660
LVGGFGWFSG GHTIILTSRN RQVLVQCNAK EIYEIKKLSE SDSIHLCREF ATGKNWKVRM  720
SLIKELVNYA SGNPLALRVL CSSIQKQCLS DEEEHLSILP HHPPIEICDA FGGIFSELDD  780
NEKNTFLDLA CFFKGENKDH VVNILDGCGF LTDLGISGLI DESLISLVDN RIEMPNIFQE  840
MGRFVVRHEH EEAGKRSRLS DSNDIVDVLT NNSGTELIEG VFLDASGLKL KLSSNVFEEM  900
DRLRLLKLHY PTSEDDCKVS LPEGLLSLPD ELRLLHWERY PLESLPENFN PENLVELNMP  960
YSNLTKLWEG TENLEMLKRI ILSHSRRLTD FSWLSKATNV EHIDLEGCTS LVEVNSSSIL  1020
HHRKLTFLSL KDCSHLRIMP TTVHLESLEV LNLSGCSELE HLEDFSPNLT EIYLAGTAIK  1080
EIPSSIVALT RLVTLDLENC NRLQHLPAEI NEKAVVGFTQ SQPGQPVCTS YFRTGICSKG  1140
PACSSDHPTL STHKNTSSIA SETQVHVELF HVLTHENPSS NNLEEVSTKK PRIHRTTSFV  1200
TSGTLDLNED EDGSSVTYGT LDLNQQENGF SFFNQPESPL GASLSDFSRG GRSNQGFQIF  1260
GVTVICKPNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5teb_A	1e-13	388	530	18	163	Recognition of Peronospora parasitica 1
5teb_B	1e-13	388	530	18	163	Recognition of Peronospora parasitica 1
5teb_C	1e-13	388	530	18	163	Recognition of Peronospora parasitica 1
5teb_D	1e-13	388	530	18	163	Recognition of Peronospora parasitica 1
5teb_E	1e-13	388	530	18	163	Recognition of Peronospora parasitica 1
5teb_F	1e-13	388	530	18	163	Recognition of Peronospora parasitica 1
5teb_G	1e-13	388	530	18	163	Recognition of Peronospora parasitica 1
5teb_H	1e-13	388	530	18	163	Recognition of Peronospora parasitica 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01547.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450890.1	0.0	PREDICTED: probable WRKY transcription factor 19
Swissprot	F4JT78	0.0	RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBL	A0A078F8C8	0.0	A0A078F8C8_BRANA; BnaC03g63240D protein
STRING	Bo00889s060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5462	9	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-138	WRKY family protein

Publications ? help Back to Top
Meyers BC,Morgante M,Michelmore RW TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J., 2002. 32(1): p. 77-92 [PMID:12366802] Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Kempema LA,Cui X,Holzer FM,Walling LL Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol., 2007. 143(2): p. 849-65 [PMID:17189325]