PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01537.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-X1
Protein Properties Length: 1112aa    MW: 121384 Da    PI: 8.1079
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01537.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.51e-06317335119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H C+k+CH GpC+pC+
  Rsa1.0_01537.1_g00016.1 317 CGRHLCEKTCHVGPCDPCQ 335
                              ******************6 PP
2zf-NF-X118.15.9e-06381398118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG+H C++ CH+GpC+ C
  Rsa1.0_01537.1_g00016.1 381 CGNHFCSEVCHPGPCGDC 398
                              ****************99 PP
3zf-NF-X123.21.5e-07440457118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG H+C++ CH G+CppC
  Rsa1.0_01537.1_g00016.1 440 CGLHTCKEVCHSGDCPPC 457
                              ****************** PP
4zf-NF-X118.64.1e-06537555119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H+C++lCH G CppC 
  Rsa1.0_01537.1_g00016.1 537 CGQHSCESLCHSGHCPPCL 555
                              ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.12E-6138208No hitNo description
PROSITE profilePS500168.965146207IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.553149205IPR001841Zinc finger, RING-type
PROSITE patternPS013590149204IPR019786Zinc finger, PHD-type, conserved site
CDDcd060087.13E-6238300No hitNo description
SMARTSM004380.21262280IPR000967Zinc finger, NF-X1-type
PfamPF014228.1264279IPR000967Zinc finger, NF-X1-type
CDDcd060083.28E-12307355No hitNo description
PfamPF014222.6E-5317334IPR000967Zinc finger, NF-X1-type
SMARTSM004384.9E-4317336IPR000967Zinc finger, NF-X1-type
CDDcd060084.11E-9371416No hitNo description
PfamPF014227.1E-5381398IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6E-5381400IPR000967Zinc finger, NF-X1-type
CDDcd060081.79E-14430477No hitNo description
PfamPF014226.6E-7440457IPR000967Zinc finger, NF-X1-type
SMARTSM004387.4E-6440459IPR000967Zinc finger, NF-X1-type
PfamPF0142218498509IPR000967Zinc finger, NF-X1-type
CDDcd060082.34E-9527579No hitNo description
PfamPF014229.9E-5537554IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4537556IPR000967Zinc finger, NF-X1-type
CDDcd060081.71E-6584631No hitNo description
PfamPF0142224594611IPR000967Zinc finger, NF-X1-type
SMARTSM004380.079594612IPR000967Zinc finger, NF-X1-type
PfamPF014220.017647662IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018647677IPR000967Zinc finger, NF-X1-type
CDDcd060081.50E-4675726No hitNo description
SMARTSM004380.014686707IPR000967Zinc finger, NF-X1-type
PfamPF014220.43687705IPR000967Zinc finger, NF-X1-type
PfamPF014241.9E-4819883IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MSSQVRRDRR HPQNSQQTWV PRGASTSVGV VNEPSHPPVN TAGVSESLAT GAAASRPVYP  60
QRQHNPHNQQ HQRSNFTGPP PPNRQRRNNN NAPGTALPVD NRQRVGSRTR PVYQGKRVAK  120
EENSGLTDPN LPQLVQELQE KLVKSSIECM ICYDKVGRSA NIWSCSSCYS IFHMHCIKKW  180
ARAPTSIDLL AEKNQGDNWR CPGCQSVQLT SSREICYRCF CGKRKDPPSD PYLTPHSCGE  240
PCGKPLERDF AAAAETAKED LCPHICVLQC HPGPCPPCKA FAPPRSCPCG KKTVHTRCSE  300
RRSLLVCGQR CEKLLNCGRH LCEKTCHVGP CDPCQVLVNA TCFCKKKAET VICGDMNVKG  360
ELKAEDGVYS CNLNCGKPLG CGNHFCSEVC HPGPCGDCDL LPSRVKTCYC GKTSLEEQTR  420
RSCLDPIPSC SNICEKLLPC GLHTCKEVCH SGDCPPCLVQ VNQKCRCGST SRTVECYITT  480
SEREKFVCSK PCGRKKNCGR HRCSERCCPH LNTKKNDLSG DWDPHVCQLP CGKNLRCGQH  540
SCESLCHSGH CPPCLEMIFT DLTCACGNTS IPPPLPCGTP VPSCQLPCSI PQPCGHSATH  600
GCHFGDCPPC SAPVEKKCVG GHVVLRNIPC GLKDIRCNKI CGKTRRCGMH ACARTCHPEA  660
CDTYNESETG VRVTCGQTCS APRRDCRHTC AALCHPSQPC PDSRCEFPVT ITCSCGRITA  720
AVPCGAGGGS TSNLSVDSVY EASVLQKLPT TLQPVESNGN RIPLGQRKLS CDDECAKLER  780
KRLLQDAFDI TPPNLDSLHF SENSAMTEII SDIYRRDPKW VLAVEERFKY LVLGKARGST  840
STLKVHVFCP MQKDKRDTVR LLAERWKLAV SNAGWEPKRF TVVHVTQKSK PPTRIIGPRG  900
GAVSLGGPHA PSFDPLVDMD PRLVVSLLDL PREANISALV LRFGGECELV WLNDKNALAV  960
FHDHARAATA MRRLDHGSVY QGAVVVQNSA QSPSLGNAWG KLPSSSSWEA QKANPWKKAV  1020
IQESDENWGA EDSPIGGSST DIQASAWRSA TSNTPVVTSV NRWSVLEPEK PNTSSLQPLV  1080
QTEGSSSSKA AGKQPEEGSS EDVVDDWEKV CE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01537.1_g00016.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435283.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
RefseqXP_018435290.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A3P5YCW40.0A0A3P5YCW4_BRACM; Uncharacterized protein
STRINGBra019958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1