PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01533.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18973.1 Da PI: 10.1021 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.4 | 1.4e-16 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i++ks r vtf kR++gilKK +EL +LC+ +++ ii+s Rsa1.0_01533.1_g00002.1 10 LISDKSTRRVTFRKRKEGILKKINELTILCGLRACAIIYSD 50 59*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.35E-21 | 1 | 84 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.955 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.80E-22 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 7.4E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MGRRKVTHEL ISDKSTRRVT FRKRKEGILK KINELTILCG LRACAIIYSD YKDGPEVWPN 60 RREVRVLLNR FSALPKEKQT KYMMDQKDLM TRMIQDAEKK LEKEQMHSRA MELGMIAAFS 120 DLDDADYSED LIKAADVVEK RINVIRQRIE ALESRTALVK KD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVTHELISDKSTRRVTFRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01533.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438360.1 | 1e-116 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A078GKE8 | 1e-106 | A0A078GKE8_BRANA; BnaA07g10380D protein | ||||
TrEMBL | A0A397YS61 | 1e-106 | A0A397YS61_BRACM; Uncharacterized protein | ||||
STRING | Bra012335.1-P | 1e-106 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 1e-83 | AGAMOUS-like 87 |