PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01487.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 110aa    MW: 12365.4 Da    PI: 10.7692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01487.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.95.9e-2114105699
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              +++ +++  +++lp +f++++g++k++  ++tl+ ++g  W v l+ ++k+gr+ l++GWk+F++a+g+k g+++v++l+++++++
  Rsa1.0_01487.1_g00009.1  14 VRNKSTSITNVRLPLRFTRDNGINKAG--KITLMCQDGVNWMVSLTNENKGGRMRLGRGWKGFCEAHGVKLGESFVLELIWEKDAS 97 
                              55566666779*************888..69999999*********9*************************************** PP

                              .EEEEE-S CS
                       B3  92 lvvkvfrk 99 
                              +v+++++k
  Rsa1.0_01487.1_g00009.1  98 PVLRFCNK 105
                              *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.6069106IPR003340B3 DNA binding domain
SMARTSM010197.5E-1913106IPR003340B3 DNA binding domain
PfamPF023621.9E-2013105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-1915105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-1920103IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-152594No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVRHSLESVA NLMVRNKSTS ITNVRLPLRF TRDNGINKAG KITLMCQDGV NWMVSLTNEN  60
KGGRMRLGRG WKGFCEAHGV KLGESFVLEL IWEKDASPVL RFCNKVNSTV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01487.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108913.16e-46PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ8S8E83e-23REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A078GD432e-42A0A078GD43_BRANA; BnaA08g12400D protein
STRINGBra010225.1-P4e-43(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3733422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.11e-25B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]