PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01437.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 265aa MW: 30077.6 Da PI: 6.1851 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.4 | 1.1e-24 | 5 | 50 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e + n qvtfskR+ng++KKA+EL++LCda vavi+fs++gk+y + Rsa1.0_01437.1_g00004.1 5 EKENNLQVTFSKRKNGLFKKASELCTLCDAHVAVIVFSPSGKVYSF 50 667899**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.726 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.40E-32 | 1 | 67 | No hit | No description |
SMART | SM00432 | 2.3E-25 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-24 | 2 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-26 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-12 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-12 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MVKMEKENNL QVTFSKRKNG LFKKASELCT LCDAHVAVIV FSPSGKVYSF GHLDVETIID 60 RFKRNDHLPL NPQPNMQLDE NPANPPIQDM NDALTAVMNE LELEQKKAED LKKIRENSKI 120 PEIWLKESIG GLDLGQAKEF KGKLEILKEQ LTHEAFEILQ GRYPHPSFYV GTSSNSPFGV 180 DGGINVNPNM NMFDQRRMLN GNNFYNHNMA LPNHPSPFGN YSHVPGYNYL PEPNQNENQN 240 PSSKEENEAG NEHHHDGHPP HPRSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01437.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470141.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 6e-76 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3N6SL06 | 1e-157 | A0A3N6SL06_BRACR; Uncharacterized protein | ||||
STRING | Bra020247.1-P | 1e-157 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23286 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-74 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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