PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01376.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 277aa    MW: 31576.5 Da    PI: 5.8
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01376.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.94e-21134184255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  Rsa1.0_01376.1_g00003.1 134 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDQAAFRLRG 184
                              8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-32133192No hitNo description
Gene3DG3DSA:3.30.730.103.7E-33133193IPR001471AP2/ERF domain
PROSITE profilePS5103224.355134192IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-23134194IPR016177DNA-binding domain
SMARTSM003802.7E-37134198IPR001471AP2/ERF domain
PfamPF008476.7E-15134184IPR001471AP2/ERF domain
PRINTSPR003671.0E-10135146IPR001471AP2/ERF domain
PRINTSPR003671.0E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MANPREASAL RFIENHLFDE LSPVASDRWM IHESAAAATE SSSDSSPTII FSSLIESEPE  60
IIDLSTPRFI DLSSSPFEFD FKPTYQTGNQ FEPEIQTQSN RKPPLKISVP AKTEWIQFNP  120
QPEVTKPIAD EKKHYRGVRQ RPWGKFAAEI RDPNKRGSRI WLGTFDTAIE AARAYDQAAF  180
RLRGSKAILN FPLEVGKWKT RSDADGEKKR KRDFEDVTVV KKVLKTEQNV NGEETFPFVK  240
SDLTEMYDWD LTGFLNFPLL SPLSPHPSFS YSQLTVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-30133195466ATERF1
3gcc_A2e-30133195466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01376.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454634.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803411e-130EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A078GLD81e-171A0A078GLD8_BRANA; BnaC09g20100D protein
TrEMBLA0A0D3E7741e-171A0A0D3E774_BRAOL; Uncharacterized protein
STRINGBo9g069410.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-113ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]