PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01367.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39438.9 Da PI: 6.5181 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.7e-18 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +v+++G g W+t +++ g++R++k+c++rw +yl Rsa1.0_01367.1_g00003.1 45 KGAWTPEEDQKLISYVNRHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 92 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.7e-16 | 98 | 142 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++++E+ ++ +++++G++ W++Iar ++ gRt++++k++w+++ Rsa1.0_01367.1_g00003.1 98 RGEFSEDEERSIISLHALHGNK-WAAIARGLP-GRTDNEIKNYWNTH 142 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.943 | 40 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-29 | 42 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 45 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 46 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.52E-10 | 47 | 92 | No hit | No description |
PROSITE profile | PS51294 | 24.891 | 93 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-16 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 98 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.69E-11 | 100 | 143 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 100 | 148 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MSQVSITYKN DVVVGSHTYS YEHRINKDGV SSSKFLTLAE LGLKKGAWTP EEDQKLISYV 60 NRHGEGGWRT LPEKAGLKRC GKSCRLRWAN YLRPDIKRGE FSEDEERSII SLHALHGNKW 120 AAIARGLPGR TDNEIKNYWN THIKKRLIKK GVVPVTDKSI SEKVQDIREK RNVNQTITAS 180 DDLDHNEKVK KSGLSSARFL NRVANRFGKR INQSVLSEII GSGGPLPSHT TTSVTVDSES 240 DKSTSSSFTP TSNLLMTING NGNATSSPST FSDSSVNDHL MYCDNNEDNI GFSTFLNDKD 300 FMMLEDSCVE NTEFMKELTR FLQEDETDNV GMMPVYEHQD SFEEIDNYFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 43 | 147 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01367.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX946184 | 0.0 | JX946184.1 Eruca vesicaria subsp. sativa MYB51 protein (MYB51-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435172.1 | 0.0 | PREDICTED: transcription factor MYB51-like | ||||
Swissprot | O49782 | 1e-152 | MYB51_ARATH; Transcription factor MYB51 | ||||
TrEMBL | U5KK48 | 1e-174 | U5KK48_ERUVS; MYB51 protein | ||||
STRING | Bra031035.1-P | 1e-169 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18570.1 | 1e-145 | myb domain protein 51 |