PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01363.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 485aa    MW: 54349.2 Da    PI: 5.0312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01363.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.11.2e-173177148
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                             l+pGfrFhPtdeelv++yLk+kv gk++++ ++i ++diyk+ePwdL 
  Rsa1.0_01363.1_g00002.1 31 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGDADIYKYEPWDLA 77
                             579************************999.99**************7 PP
2NAM94.22.1e-2912820550128
                      NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              ++k++++ew+f++  dkky +g r nr+t+ gyWkatg+d+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl
  Rsa1.0_01363.1_g00002.1 128 RLKTRDQEWFFYCALDKKYGNGARMNRSTNIGYWKATGRDREIRR-DVQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 205
                              5678999*************************************9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-182280IPR003441NAC domain
PROSITE profilePS5100548.51231229IPR003441NAC domain
PfamPF023651.0E-2433205IPR003441NAC domain
SuperFamilySSF1019412.75E-34124230IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGPDSVAAVE SSPSSSATAP LSTAAVAATA LAPGFRFHPT DEELVSYYLK RKVLGKPVRF  60
DAIGDADIYK YEPWDLAGNE VCSCCYVFGY LKVLSLTPCV FLIPYGFLAK LVLPLWFASV  120
SGHEMFSRLK TRDQEWFFYC ALDKKYGNGA RMNRSTNIGY WKATGRDREI RRDVQLLGMK  180
KTLVFHSGRA PDGLRTNWVM HEYRLLDYET ESNGNLVQDA YVLVKVFHKN NIGPPCGNRY  240
APFMEEEWAD DGVALIPGVV RAEPLPLPNG NHQMDQSESK ELININEPPR EVTPMDIEVN  300
HQNQQLDNAL KPQENNNSNN NHCDEDEKAL KRENAEVDER PPPACAPSPL LQYKRRRQNE  360
SNSKDSSRTT TQDHSSSTAT TLIPSSAAAA TSTAISALLE FSLMDISEKK ENTIASPPTS  420
LPSNEEELND LKKEIHEMSV ERETFKLEMM SAEAMISILQ SRIDALRDEN DELKKMNSDK  480
GQAML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-352323112170NAC domain-containing protein 19
3swm_B1e-352323112170NAC domain-containing protein 19
3swm_C1e-352323112170NAC domain-containing protein 19
3swm_D1e-352323112170NAC domain-containing protein 19
3swp_A1e-352323112170NAC domain-containing protein 19
3swp_B1e-352323112170NAC domain-containing protein 19
3swp_C1e-352323112170NAC domain-containing protein 19
3swp_D1e-352323112170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01363.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667521e-145KC966752.1 Brassica napus NAC transcription factor 50 (NAC50.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492855.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A3P6FBP60.0A0A3P6FBP6_BRAOL; Uncharacterized protein
STRINGBo5g137360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.10.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]