PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01360.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 374aa    MW: 42162.6 Da    PI: 6.5859
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01360.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.7e-21953145
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             k+ien+  rq tf+kR+ngilKKA+ELSvLCd++  +++fs+ gk
  Rsa1.0_01360.1_g00011.1  9 KKIENSAGRQATFAKRKNGILKKASELSVLCDVDLVLLMFSPAGK 53
                             68****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.306153IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-25294IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-201054IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRVKLKIKK IENSAGRQAT FAKRKNGILK KASELSVLCD VDLVLLMFSP AGKPSLCCAS  60
RSGVEEVIAK FSQVTPDERA KRKIEALETL KKTFQKLDHH VNIRDFISSS NPTTEDLSTQ  120
ARILQDRISE IHGRLRFWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQQHAMQ  180
IENANFVKDW STSLLQDGIQ IPLEQQLQSM PWILNNNTTN VVTEEHNSMP QREVECSASS  240
SFGSYPGYFG TGKSPEITIS GQETSLLDEL TNGHLKPQQQ FTDNNIIPYI PSLQNDLNHH  300
QTLPLPLPLP PVFNFPMNQR EYHMNGFFEA PPPGASAYNN ITNQARFGSS NSSSLPCSIS  360
MLDEYLFSQM QQPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-14192190Myocyte-specific enhancer factor 2B
1tqe_Q5e-14192190Myocyte-specific enhancer factor 2B
1tqe_R5e-14192190Myocyte-specific enhancer factor 2B
1tqe_S5e-14192190Myocyte-specific enhancer factor 2B
6c9l_A5e-14192190Myocyte-specific enhancer factor 2B
6c9l_B5e-14192190Myocyte-specific enhancer factor 2B
6c9l_C5e-14192190Myocyte-specific enhancer factor 2B
6c9l_D5e-14192190Myocyte-specific enhancer factor 2B
6c9l_E5e-14192190Myocyte-specific enhancer factor 2B
6c9l_F5e-14192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01360.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481144.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_018481145.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
RefseqXP_018481146.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A397ZA280.0A0A397ZA28_BRACM; Uncharacterized protein
TrEMBLM4E7N60.0M4E7N6_BRARP; Uncharacterized protein
STRINGBra024792.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-176AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]