PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01333.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 318aa    MW: 36567.7 Da    PI: 9.1812
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01333.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.44.5e-3135122186
                              EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              f kvltpsdv+k++rlv+pk++ae++   +++ ++++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+
  Rsa1.0_01333.1_g00001.1  35 FYKVLTPSDVGKLNRLVIPKQHAENYfplENN-QTGTVLDFEDRTGKTWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDSGDTVSFH 119
                              789********************999*97544.46789***********************************************9 PP

                              E-S CS
                       B3  84 ldg 86 
                              + +
  Rsa1.0_01333.1_g00001.1 120 RGH 122
                              655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-3830121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-3032121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-2633120No hitNo description
PfamPF023624.9E-2835123IPR003340B3 DNA binding domain
PROSITE profilePS5086314.7235139IPR003340B3 DNA binding domain
SMARTSM010191.1E-2235139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNTSTRTSSV QEPTENGASG SDNNNFNSAM KEHMFYKVLT PSDVGKLNRL VIPKQHAENY  60
FPLENNQTGT VLDFEDRTGK TWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DSGDTVSFHR  120
GHVPGNNEPE KRINILYIDW RHRANRNLVH NINYHHYPLL GSSPYPTASY YPHYRRFSPF  180
YQEREFLGYG YGRIVHGPLD HHLHQWNLGR SEPLVYDSYP VFPTMRFTSS SAMLPPSLPS  240
QPPTVKKVRL FGVDVEESSF SGAEMSVAGY SPFSPVVIRD DESTWRSSRG EMCASSSSSV  300
MQLTGDEEYQ RKGKSVEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-50291432113B3 domain-containing transcription factor NGA1
5os9_B9e-50291432113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01333.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475147.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_018475148.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-140NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A3P6AVI81e-146A0A3P6AVI8_BRACM; Uncharacterized protein
STRINGBostr.7365s0004.1.p1e-148(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-136B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]