PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01296.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GATA | ||||||||
Protein Properties | Length: 263aa MW: 29497 Da PI: 5.7178 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.1 | 4.9e-18 | 178 | 211 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ + Rsa1.0_01296.1_g00005.1 178 CSHCGTNTTPQWRTGPAGPKTLCNACGVRFKSGR 211 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.8E-77 | 20 | 263 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.4E-14 | 172 | 222 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.47E-14 | 175 | 235 | No hit | No description |
PROSITE profile | PS50114 | 12.281 | 176 | 208 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.6E-14 | 176 | 209 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.72E-15 | 177 | 234 | No hit | No description |
Pfam | PF00320 | 9.1E-16 | 178 | 212 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 178 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MELWTEGRAL KASLRGEAIK HQVIVSEELS RTSSAEDFSV ECFLDFSEEG QEQEQEEGEG 60 LVSVCSSQEE QDCCIFSSQP RIFDQLPSLP DEDVEELEWV SRVVDDCSSP EVSLLFTQPH 120 KTKPSFSSSI PVKPRTKRSR NSLTGDRVWP LVSINQHAAG DQCKKKKLET ALVFQRRCSH 180 CGTNTTPQWR TGPAGPKTLC NACGVRFKSG RLCPEYRPAD SPTFSNEIHS NLHRKVMELR 240 KSKELGEERG EATTKSDQVK FGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01296.1_g00005.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352771 | 0.0 | AK352771.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-P20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447802.1 | 1e-176 | PREDICTED: GATA transcription factor 3-like | ||||
Swissprot | Q8L4M6 | 1e-144 | GATA3_ARATH; GATA transcription factor 3 | ||||
TrEMBL | M4F0P9 | 1e-173 | M4F0P9_BRARP; GATA transcription factor | ||||
STRING | Bra034644.1-P | 1e-174 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5739 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 1e-145 | GATA transcription factor 3 |
Publications ? help Back to Top | |||
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