PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01272.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 715aa    MW: 81292.7 Da    PI: 6.3061
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01272.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.54.4e-1133417101371
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+avs +d ++a+ lL+++++++s++gd ++Rla+yf+  L+arla++++++y al++++ts    s+ l+a+++++ 
  Rsa1.0_01272.1_g00005.1 341 LRNLLVSCAQAVSVNDRKMAEDLLKQVRQHSSSHGDGTERLAHYFADSLEARLAGTGTQIYTALSSKKTS---ASDMLKAYQTYVS 423
                              689***************************************************************9999...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              v+P+ k + + aN+ Il  +  ++++HiiDf+is+G+QWp+L++ La R++g+ +lRiTg++ p+ g   +e + etg+rLa++++
  Rsa1.0_01272.1_g00005.1 424 VCPFNKTAIIFANHSILHLATDAKTIHIIDFGISYGFQWPPLIHRLAWRRGGSCKLRITGIELPQRGfrPAEGVVETGHRLARYCQ 509
                              *****************************************************************99******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              + +vpfe+n  +a+++e++++e+L++++gE +aVn+ ++  +llde+v+++s+rd+vLkl+k+++P+v++ +    ++n++ F++r
  Rsa1.0_01272.1_g00005.1 510 RYNVPFEYNG-IAQKWETIKVEDLKLREGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIKKIRPNVFIPAVLSGSYNAPFFVTR 594
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f e l +ys+lfd+ e++lp+ +  r++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF++++l+++ +++ kl+++
  Rsa1.0_01272.1_g00005.1 595 FREVLFHYSSLFDMCETSLPQGDPMRVMFEKEFYGREIMNVVACEGSERVERPESYKQWQARAMRAGFRQLTLEKELVQKLKLMVE 680
                              *************************************************************************************9 PP

                     GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                                + s+++ v+++ ++l++gWk+r +++ +
  Rsa1.0_01272.1_g00005.1 681 SGYkSKEFDVDQDGNWLLQGWKGRIVYASC 710
                              988899*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.61315692IPR005202Transcription factor GRAS
PfamPF035141.5E-110341710IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MGSYSGGFPG SFDNFDFNFG NGFYLDDQPL LEVPSPFPPP PPPPAHPDPY SQQNLAADAD  60
ADISDSVLKY ISQVLMEEDM EEKPCMFHDA LSLQAAEKSL YEALGEKYPT DHSEPLMTTT  120
FTTTTVQLAR SPDGSSPSTT SSDWSFDCFE NNRPSWFHTP VPENFVFQST RSNIPKSSDV  180
VRKSSFNHDL LSNMFKDSEL AFQFERGKEE ASKFLPKSCQ LVIDVESSYN PSNDPKEHNN  240
SVPYRRTGKK KHWREDEEEH LVSEERSKKQ SAVYVDEAEL SEMFDKILLF GRPKEQPLCI  300
LNDNFIKETA KDSSLRSKDD TTQQKHAASC GNSYVKDTPD LRNLLVSCAQ AVSVNDRKMA  360
EDLLKQVRQH SSSHGDGTER LAHYFADSLE ARLAGTGTQI YTALSSKKTS ASDMLKAYQT  420
YVSVCPFNKT AIIFANHSIL HLATDAKTIH IIDFGISYGF QWPPLIHRLA WRRGGSCKLR  480
ITGIELPQRG FRPAEGVVET GHRLARYCQR YNVPFEYNGI AQKWETIKVE DLKLREGEFV  540
AVNSLFRFRN LLDETVAVHS PRDAVLKLIK KIRPNVFIPA VLSGSYNAPF FVTRFREVLF  600
HYSSLFDMCE TSLPQGDPMR VMFEKEFYGR EIMNVVACEG SERVERPESY KQWQARAMRA  660
GFRQLTLEKE LVQKLKLMVE SGYKSKEFDV DQDGNWLLQG WKGRIVYASC TLVPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-433386842348GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244250RRTGKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01272.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434838.10.0PREDICTED: scarecrow-like protein 33
RefseqXP_018434840.10.0PREDICTED: scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A397YQ390.0A0A397YQ39_BRACM; Uncharacterized protein
STRINGBo4g065860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein