PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01272.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 629aa    MW: 72475.1 Da    PI: 6.2338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01272.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.42.8e-1072506262373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfse 86 
                              ++lL++cA+a+s+gd++ a  lL ++++ +sp gd+ qRla++f++AL+arl +++  + ++  ++ ++ +++ s+ l+a++++  
  Rsa1.0_01272.1_g00004.1 250 RTLLTHCAQAISTGDKTTALDLLLQIRQDSSPLGDASQRLAHCFANALEARLRGNTGPVIQTYyNAITSMKETASDILKAYRVYLS 335
                              689***************************************************6555555553888888888************* PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                               sP++++ ++   ++Il+a++ +e +H++Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa++++
  Rsa1.0_01272.1_g00004.1 336 SSPFVTLMYFFSFRMILDAAKDAEVLHVVDFGILYGFQWPMFIQYMSGRKDVPRKLRITGIELPQRGlrPAERIEETGRRLAEYCK 421
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFle 255
                              +++vpfe+++++++++e+++++e++++pgE+laVn  l+l++l de++  e  +rd+vLkl+++++P+v+v++  + + n++ F  
  Rsa1.0_01272.1_g00004.1 422 RFNVPFEYKAIASQHWETIRIDEFDIRPGEVLAVNAGLRLKTLQDETGGEETcPRDAVLKLIRKMNPDVFVHAIVNGSFNAPFFIS 507
                              **********9999**********************************999999******************************** PP

                     GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                              rf ea+++y alfd+++++lpr+++er+  Ere+ gre++nv+ace+ +r+er et+++W+ r+ +aGFk+ p++ ++++  +  l
  Rsa1.0_01272.1_g00004.1 508 RFKEAVYHYYALFDMFDSTLPRDNQERVRFEREFYGREAMNVIACEEGDRVERPETYRQWQVRMVRAGFKQKPVKAEMVELFREKL 593
                              ************************************************************************************** PP

                     GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                              +k    + + v+e+s++l++gWk+r+L++ S+W
  Rsa1.0_01272.1_g00004.1 594 KKWRyHKDFVVDENSKWLLQGWKGRTLYASSCW 626
                              *9998999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.952223606IPR005202Transcription factor GRAS
PfamPF035149.6E-105250626IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDPNLSLNGF EYLDESLFLD SSLDFDRNPS SFFLSDPLLQ PDENDSSNTL LRYVNQILME  60
ESAGDKQSMF YDSLALRKTE EMLQQVITDS KAHSFNSHRD DSVVVTTSSD ASGSISSTRP  120
VNEIVVKSMF SDAESDLQFR RGLEEARKFL PNSDQWVFNL ERPLVESDLS RVKKSHEREV  180
LDLEEVRSSK QSATNVEDVE VTDMFDNVLL LDGECDPQTL STQQTLSNNK TKSKTKKAKK  240
KKKSQVIDFR TLLTHCAQAI STGDKTTALD LLLQIRQDSS PLGDASQRLA HCFANALEAR  300
LRGNTGPVIQ TYYNAITSMK ETASDILKAY RVYLSSSPFV TLMYFFSFRM ILDAAKDAEV  360
LHVVDFGILY GFQWPMFIQY MSGRKDVPRK LRITGIELPQ RGLRPAERIE ETGRRLAEYC  420
KRFNVPFEYK AIASQHWETI RIDEFDIRPG EVLAVNAGLR LKTLQDETGG EETCPRDAVL  480
KLIRKMNPDV FVHAIVNGSF NAPFFISRFK EAVYHYYALF DMFDSTLPRD NQERVRFERE  540
FYGREAMNVI ACEEGDRVER PETYRQWQVR MVRAGFKQKP VKAEMVELFR EKLKKWRYHK  600
DFVVDENSKW LLQGWKGRTL YASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-432536268374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01272.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439723.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018439724.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018439725.10.0PREDICTED: scarecrow-like protein 34
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A078HM600.0A0A078HM60_BRANA; BnaC04g15290D protein
STRINGBo4g065830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein