PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01230.1_g00011.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 236aa MW: 25487.3 Da PI: 8.8586

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01230.1_g00011.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	32	89	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCyynnyslsqPryfCk+C+ryWtkGG+lrn+PvGgg+rknk+s+ Rsa1.0_01230.1_g00011.1 32 SLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCKRYWTKGGTLRNIPVGGGCRKNKRST 89 689****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	26	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-34	33	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGCPSNPPHL DHEQKKPSPA TGAARPQPPE LSLRCPRCDS TNTKFCYYNN YSLSQPRYFC 60 KSCKRYWTKG GTLRNIPVGG GCRKNKRSTS SATRSLRTTP EPASHDGKAF SAASFGGFGN 120 NEHIDLSLAF ALLNKQPPGS SSQLGFPSEF GSSHQSGMES VFGTSQQKEN TGYAFGNGSS 180 GLDMAMSDPN KVLWGFPWQM NGEMNMGGGG GGHVDHIDSG REIWTNMNYI NSGALM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01230.1_g00011.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC234737	0.0	AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453801.1	1e-177	PREDICTED: dof zinc finger protein DOF5.3-like
Swissprot	Q84TE9	1e-137	DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBL	A0A078F757	1e-162	A0A078F757_BRANA; BnaA02g06470D protein
TrEMBL	A0A3P5ZYW9	1e-162	A0A3P5ZYW9_BRACM; Uncharacterized protein
STRING	Bra020261.1-P	1e-162	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6132	18	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-126	TARGET OF MONOPTEROS 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]