PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01199.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 133aa    MW: 14455.7 Da    PI: 7.6727
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01199.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.9e-211565255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr+++ +g+++AeIrd ++ g   r++lg+f+taeeAa+a+++a+ +++g
  Rsa1.0_01199.1_g00013.1 15 KFRGVRRRP-WGKYAAEIRDSRKHG--ERIWLGTFDTAEEAARAYDQAAYSMRG 65
                             79*******.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-151565IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-321575IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-231575IPR016177DNA-binding domain
SMARTSM003802.4E-351579IPR001471AP2/ERF domain
CDDcd000181.44E-261574No hitNo description
PROSITE profilePS5103223.5381573IPR001471AP2/ERF domain
PRINTSPR003671.7E-111627IPR001471AP2/ERF domain
PRINTSPR003671.7E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEQGGRGGGG GEQGKFRGVR RRPWGKYAAE IRDSRKHGER IWLGTFDTAE EAARAYDQAA  60
YSMRGQAAIL NFPHEYNMGS GGAATAAGSS SSSASSSSRQ VFEFEYLDDS VLEELLEDGE  120
NPNKNNTNKG KKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-5711331131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01199.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659387.19e-68ethylene-responsive transcription factor ERF096
SwissprotQ9LSX02e-57ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A078IN682e-66A0A078IN68_BRANA; BnaC09g17590D protein
TrEMBLA0A3P6EFT92e-66A0A3P6EFT9_BRAOL; Uncharacterized protein
STRINGBo9g059180.18e-64(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.15e-29ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]