PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01188.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 202aa    MW: 23299.4 Da    PI: 7.4927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01188.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.62.9e-20161644128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk... 79 
                              G++F+P d+el++eyL +k+egk+  +   i+  d+y+ ePw L++ + +  +++ewy+F++r + ++     gk+++r +t+   
  Rsa1.0_01188.1_g00005.1  16 GIQFQPYDDELINEYLIPKLEGKPRGE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKAKRkITRdnd 98 
                              99**********************655...9999**********86444444889*****99977655334456677774444666 PP

                      NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfy........kgrapkge...........ktdWvmheyrl 128
                              sg Wka  k  ++++k ++ ++g  +tL+f         k  +++g            +++W+m ey l
  Rsa1.0_01188.1_g00005.1  99 SGSWKANAK-GDIKDKeTKMVIGEHQTLAFVksevnnkkK--QKSGDgtscdvgvpgsESSWIMTEYML 164
                              9****9987.67777646778**********666655331..222223344444555599999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-216180IPR003441NAC domain
PROSITE profilePS5100523.59313182IPR003441NAC domain
PfamPF023653.7E-1516163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MYEYNDMYEY NDEDGGIQFQ PYDDELINEY LIPKLEGKPR GEITMKDVYS KEPWLLDHPM  60
GSFFKKNEWY YFVTRTQLSK KKIGCGKKAK RKITRDNDSG SWKANAKGDI KDKETKMVIG  120
EHQTLAFVKS EVNNKKKQKS GDGTSCDVGV PGSESSWIMT EYMLPEIDDK FLELVICKIH  180
VVENSNKKKK DDPHKASTSS LT
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01188.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453519.11e-140PREDICTED: uncharacterized protein LOC108824593
RefseqXP_018479483.11e-141PREDICTED: NAC domain-containing protein 35-like
TrEMBLA0A0D3ECL51e-108A0A0D3ECL5_BRAOL; Uncharacterized protein
TrEMBLA0A397XK521e-108A0A397XK52_BRACM; Uncharacterized protein
STRINGBo9g135840.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-14NAC domain containing protein 35