PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01171.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 40971.3 Da PI: 7.0514 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 5e-53 | 17 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPt+eel+ +yLkkkv+ ++++l +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+W Rsa1.0_01171.1_g00008.1 17 VPPGFRFHPTEEELLYYYLKKKVSYEPIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFW 101 69****************************.9***************952444443456*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+++ ++++++gl+ktLvfy+grap+g+kt+W+mheyrl Rsa1.0_01171.1_g00008.1 102 KATGRDKSIHLNSSKKIGLRKTLVFYTGRAPHGQKTEWIMHEYRL 146 *******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-59 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.856 | 17 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-27 | 18 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW 60 DLKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKSI HLNSSKKIGL 120 RKTLVFYTGR APHGQKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFHQEQDQD 180 HHHHQYISTN NDHDHHHHQH QTESNSNNHS SLIPLSLDHH HHHIERQIQM PLHEFSNTLS 240 HGSMHLPQLF SPDSAAAAAA AQPFVLAINT TDIECSQNLL RLTSNNNNNY GGDWSFLDKL 300 LTTTNMNQQQ QMQNHQAKCF GDSSNNDQDM GNNNGNERFP FHYLGNDANL LKFPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-50 | 14 | 168 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-50 | 14 | 168 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-50 | 14 | 168 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-50 | 14 | 168 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-50 | 14 | 168 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-50 | 14 | 168 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01171.1_g00008.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189312 | 0.0 | AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455645.1 | 0.0 | PREDICTED: protein SOMBRERO | ||||
Swissprot | Q9MA17 | 0.0 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A3P6G287 | 0.0 | A0A3P6G287_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g123980.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6653 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-150 | NAC family protein |
Publications ? help Back to Top | |||
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