PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01145.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 337aa MW: 37806.4 Da PI: 5.5385

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01145.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.6e-32	171	225	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav++LGG ++A Pk++l++mkv+gLt++hvkSHLQkYR+ Rsa1.0_01145.1_g00007.1 171 KGRMRWTPELHEAFVEAVNNLGGMNNAKPKAVLKHMKVQGLTIYHVKSHLQKYRT 225 56****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.496	168	228	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-29	170	226	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-17	170	225	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-22	171	225	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-10	173	224	IPR001005	SANT/Myb domain
Pfam	PF14379	8.9E-21	257	301	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
METRCPLSNL AHTSSIPPDI SFGSGHVHLP SANGEAVGHI YSNDLPNAAA SMVSHETPLI 60 SEILDWDASS IHELLDFPLD YSPIQLEEDI HKPTDLAELD HELITSDNPL WNHLFVDTCS 120 TSSPSKVQEP QVSLQQQPSP CVELQPLVRT VSSNSFTSNN NTASAAAAAA KGRMRWTPEL 180 HEAFVEAVNN LGGMNNAKPK AVLKHMKVQG LTIYHVKSHL QKYRTARYIP EPSEGSQETK 240 LTPLEHVTSL DTKRGIDITE ALRVQMEVQK QLHEQLDIQR KMQLRIEEQG KVLLMMFEKQ 300 NMDFRKQEQE DKTSERAPES CSEEADSPRP KRPRNNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-27	170	228	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-27	170	228	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-27	170	228	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-27	170	228	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-27	170	228	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-27	170	228	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-27	170	228	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-27	170	228	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01145.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452734.1	0.0	PREDICTED: myb family transcription factor PHL4-like isoform X1
Refseq	XP_018452735.1	0.0	PREDICTED: myb family transcription factor PHL4-like isoform X1
Swissprot	Q8GXC2	3e-97	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	A0A3N6Q737	1e-161	A0A3N6Q737_BRACR; Uncharacterized protein
STRING	Bra036679.1-P	1e-158	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	7e-98	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]