PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01126.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YC
Protein Properties Length: 291aa    MW: 32327.7 Da    PI: 4.7491
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01126.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.41.6e-186861898
                    NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                             ++++P arikki++adedv +i+  +Pvl+sk+ elf+ +l  r++  + e   +t+    ++ +v+r ++fdfl ++v +
  Rsa1.0_01126.1_g00005.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 86
                             5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-25372IPR009072Histone-fold
SuperFamilySSF471132.55E-19488IPR009072Histone-fold
PfamPF008082.7E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK  60
TVSSLHLKHC VERYNVFDFL REVVSKVPDY GQAQGSGDVT MEDRSVSKRR KPISDEANDS  120
DEENKKSKTQ EVGNAKPGGR GSRGRGRGRG RGGRAARAAE RENLNREMEL ETAMAEQPPS  180
HQDTNHQMHV SVSSPQENEK KDVDGASNED TKQQQQQLQS PKEGIDFDLN AESLDLNETK  240
PAPAAAAADT ATTSEEYPGW PMELGKIDPT QLASLGKRID EEEEEDYDEE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142151RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01126.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530670.0AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441086.10.0PREDICTED: dr1-associated corepressor
TrEMBLA0A078IKW11e-164A0A078IKW1_BRANA; BnaA01g30580D protein
STRINGBo1g139230.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-132nuclear factor Y, subunit C11