PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01121.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 550aa    MW: 60591.2 Da    PI: 7.7778
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01121.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.7e-08231251526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f++ G C+ Gd+C +aHg
  Rsa1.0_01121.1_g00002.1 231 PCPEFRK-GSCPKGDSCEYAHG 251
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.78E-1240126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0224575IPR002110Ankyrin repeat
PROSITE profilePS5029714.31845146IPR020683Ankyrin repeat-containing domain
PfamPF136375.0E-54698No hitNo description
Gene3DG3DSA:1.25.40.201.5E-1446148IPR020683Ankyrin repeat-containing domain
CDDcd002041.27E-1347143No hitNo description
SMARTSM002481.880112IPR002110Ankyrin repeat
PROSITE profilePS5010313.976226253IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5226252IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5231251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6231252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4258290IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925261285IPR000571Zinc finger, CCCH-type
SMARTSM0035627261284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MGLLEYAACD DLSSFRREVE EKGLDLDEPG LWYCKKLGSN KMGLEERTPL MVAAMYGSKK  60
VLTFIVSTGK SDVNRACGEE RVTALHCAVA GCSVGMVEVI NALLDASALA NAVDANGNSP  120
LDLFARVSRF VASPRRKAVE LLLRGGGSEG MMISEAVEEE EVKIVSKYPA DASLPDINEG  180
VYGSDEFRMY SFKVKPCSRA YSHDWTECAF VHPGENARRR DPRKYPYTCV PCPEFRKGSC  240
PKGDSCEYAH GVFESWLHPA QYKTRLCKDE TGCARKVCFF AHRREEMRPV NASTGSAVSQ  300
SPLEMMSGLS PLAYSSGVST RPVSPMSNNS VASSPRNGSW QNRVNSLSPP TLQLNGGSRL  360
KSTLSARDLD IDMEMELRLR GFNNVEETFG SYVSSPSRNS QMGQNMNQHY PSSPVRQQPP  420
PHHFDSSAAV AAAVMNARSS AFAKRSLSFK PQVASSPSNL SDWGSPSGKL DWGVQGDELS  480
KMRRSVSFGI RGDNNSNNAG RDYRNEPDVS WVNSLVKDSV VSERGFGMNE RVRIMSWAEQ  540
MYREKEQTVV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01121.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492191.10.0PREDICTED: zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLM4CSL30.0M4CSL3_BRARP; Uncharacterized protein
STRINGBra007205.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]