PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_01091.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 469aa MW: 52648.6 Da PI: 4.4375 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.5 | 2.4e-31 | 58 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lp+G++F+P+d e++++ L+k+ + g + ++ e+i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+ Rsa1.0_01091.1_g00003.1 58 LPRGVKFDPSDPEIIWHLLAKSgLLGLSshpfID--EFIPTVNqddgICYTHPKNLP-GVKQDGTVSHFFHRAIKAYSTGTRKRRK 140 799************9999988544444443422..33544433345**********.677888999******************8 PP NAM 78 tk.....sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +W++tg++k+v+ +g + g+kk++v+y g+a kt+Wvmh+y+l Rsa1.0_01091.1_g00003.1 141 IHdddfgDVRWHKTGRTKPVVL-DGVQRGCKKIMVLYGGKAV---KTNWVMHQYHL 192 6555655889************.99************76665...6********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-37 | 43 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.849 | 58 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-12 | 59 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 469 aa Download sequence Send to blast |
MAGRSWLVDS NRIATKIKSA SGQHDPHQVV WNSNPTKHCP NCHHVIDNND EVDDWPGLPR 60 GVKFDPSDPE IIWHLLAKSG LLGLSSHPFI DEFIPTVNQD DGICYTHPKN LPGVKQDGTV 120 SHFFHRAIKA YSTGTRKRRK IHDDDFGDVR WHKTGRTKPV VLDGVQRGCK KIMVLYGGKA 180 VKTNWVMHQY HLGTDEDEKD GDYVVSKIFY QQPQQILKQG GGDKGEQDVS DDIFAATTTT 240 PKSDPLTPKL FTPEPQQAVR LCSDSHFPDD YVAAPEVSLA EISEAVYMED EVQGVQRNHE 300 RTSSEDEPGP ETWIENRDNE IMVYDEEEKE NGKEDGNEQE DREKDENENQ AAAEEDGNDQ 360 DPNWFDSGGS QFILDSQQLV EHLSLCDDLL QVGSQDANNG GGSRNKQPCF GDYAHLGGSE 420 DFKRDLEDCQ KLVLDPSNID LDTPPEFRLS QLEFGSQESF LAWGTGKTD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_01091.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433044.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Refseq | XP_018486643.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A397XYK3 | 0.0 | A0A397XYK3_BRACM; Uncharacterized protein | ||||
STRING | Bra024733.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |