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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_01079.1_g00008.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
GRAS |
| Protein Properties |
Length: 418aa MW: 46839.5 Da PI: 5.1408 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_01079.1_g00008.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 319.3 | 8.3e-98 | 29 | 415 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalkl 83
++lLl+cA+a++s+d++la++lL+ l+++a pd+ +++qRl++ f++AL +r a++ + l++++ + + ++ +++++++++ l
Rsa1.0_01079.1_g00008.1 29 EQLLLHCATAIDSNDAALAHQLLWVLNNIAPPDAdSSTQRLTSAFVRALLSRAASKIPALFSTVfgnSFFQPPPADEIHRFSVVDL 114
79*******************************9679*************************986655667777778888888888 PP
GRAS 84 ..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetger 164
f +++P+++f++++aN+aI aveg ++vHi+D+++++++Q p+L++a+as+ + pp l++T+v+sp+++ + ++ee+g++
Rsa1.0_01079.1_g00008.1 115 agFIDLTPWHRFGFIAANEAIITAVEGYSTVHIVDLSLTHCMQIPTLIDAMASKLNTPPLLKLTVVSSPSTFppfINISYEELGSK 200
9*********************************************************************999999********** PP
GRAS 165 LakfAeelgvpfefnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvv 240
L +fA++ +++++f+++ +++ +++l l++Lr+ + +Eal+Vn++++l +++de+++ + r+ +L++++sl+P++v+
Rsa1.0_01079.1_g00008.1 201 LVNFATTRNIEMQFTIIpstYSDGFSSL-LQHLRIYStsyNEALVVNCHMMLRYIPDETLTPSLpslsLRNVFLNQLRSLNPTIVT 285
****************988666677777.99999888889****************99875332226589**************** PP
GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
++e++ad++se++++r+ +a++y++ fd++++ + se+r+ +E+e ++++i+nvva+eg er+er+et+++W er++++ F+
Rsa1.0_01079.1_g00008.1 286 LIEEDADLTSENLVTRLRSAFNYFWIPFDTTDTFM---SEQRRLYEAE-ISWKIENVVAKEGVERVERTETKGRWLERMRDSEFGG 367
**********************************7...9*********.************************************* PP
GRAS 327 vplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
v++se+a+++ k++l +++ ++g++ +++++slvl+Wk++++v++++W
Rsa1.0_01079.1_g00008.1 368 VRVSEEAVSELKAMLGEHAvGWGMKKDDDDESLVLTWKGHSVVFATVW 415
************************************************ PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MTRTGIISPT RFPSFKSQRC SGGDASFMEQ LLLHCATAID SNDAALAHQL LWVLNNIAPP 60
DADSSTQRLT SAFVRALLSR AASKIPALFS TVFGNSFFQP PPADEIHRFS VVDLAGFIDL 120
TPWHRFGFIA ANEAIITAVE GYSTVHIVDL SLTHCMQIPT LIDAMASKLN TPPLLKLTVV 180
SSPSTFPPFI NISYEELGSK LVNFATTRNI EMQFTIIPST YSDGFSSLLQ HLRIYSTSYN 240
EALVVNCHMM LRYIPDETLT PSLPSLSLRN VFLNQLRSLN PTIVTLIEED ADLTSENLVT 300
RLRSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGVERVERT ETKGRWLERM 360
RDSEFGGVRV SEEAVSELKA MLGEHAVGWG MKKDDDDESL VLTWKGHSVV FATVWVPI
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
