PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01077.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 44317.3 Da PI: 4.343 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.5 | 1.9e-47 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 l+pGfrFhPtd elv +yLk+kv gkkl + ++i+e+diy++eP+dLp k +k+++ +w+fF++r+kky+tg r+nrat+ gyWk Rsa1.0_01077.1_g00010.1 6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIAELDIYNFEPSDLPdKsYIKSGDLKWHFFCPREKKYSTGVRANRATACGYWK 90 579************************999.89**************96347778888**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +tgk+++vl+ +ge+ g ktLv++ g++p+ge+tdWvmheyrle Rsa1.0_01077.1_g00010.1 91 TTGKERDVLC-NGEVAGKIKTLVYHFGKSPRGERTDWVMHEYRLE 134 **********.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-56 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.951 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE LDIYNFEPSD LPDKSYIKSG 60 DLKWHFFCPR EKKYSTGVRA NRATACGYWK TTGKERDVLC NGEVAGKIKT LVYHFGKSPR 120 GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP FKDEDWSDEE 180 QDTGVRATNA PAVLQGETSL VVASSHVPDK DCFVGMIAES CVSDFLQATT TATGLPQLND 240 AANTPLSAAP LLDSNSTASL APPTLEAPNN DDDIYSMLDL FVDEDEYFRF SEFNNTEMRH 300 DPNVSAPICL GEGEDIFSEL PDFSNMQHNS MPRTPSFDLI ENSELYLELQ DLTAPLAPPQ 360 IGNASDSYLS YQGQFDFSTA ANDDDPYGFS ASMGQGPDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-43 | 6 | 156 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01077.1_g00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470726.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 0.0 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A3P6ABT9 | 0.0 | A0A3P6ABT9_BRACM; Uncharacterized protein | ||||
STRING | Bra028640.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 1e-170 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
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