PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01027.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 718aa    MW: 80564.4 Da    PI: 6.7083
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01027.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.7e-2061116156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              r++ +++tk+q++e+e++F+++++p+ ++r++L+++lgL+  q+k+WFqN+R++ k
  Rsa1.0_01027.1_g00002.1  61 RKRYHRHTKHQIQEMENFFKECPHPDDAQRKDLSRQLGLDHHQIKFWFQNKRTQIK 116
                              789999**********************************************9988 PP
2START157.21.3e-492454642206
                              HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                    START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetl 76 
                              la  a++el+++a ++ep+W   +      +n  e++++f  ++v       +++ea++a+ +v+m++ + v++l+d++  W++++
  Rsa1.0_01027.1_g00002.1 245 LAVVAMEELIAMARLDEPLWNIRAngtsLALNLNEYTRTF--GNVvgpilngFRTEASKATSIVFMNHLDIVQSLMDVN-LWSNMF 327
                              66779*****************999988789999999999..666789*******************************.****** PP

                              S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
                    START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151
                              a    + + ++ i +       ga +lm+ae+q+lsp+v+ R+ +fvRy++q g+g w++vdvS+++  +  e     +++++pSg
  Rsa1.0_01027.1_g00002.1 328 ArmvaRSMSHDLILTEvqgnfdGAFHLMTAEYQVLSPVVStRECYFVRYSKQRGDGIWAVVDVSIEHLFPHLE----LKCRRRPSG 409
                              *7777444444444447779***********************************************999887....99999**** PP

                              EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              +li++++ng++kvtwvehv++++  +h l++sl++sg+a  a  wv+tl+rqce+
  Rsa1.0_01027.1_g00002.1 410 CLIQQLENGYCKVTWVEHVEVDDGEVHPLYKSLISSGQALSAESWVETLERQCER 464
                              *****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-2239116IPR009057Homeodomain-like
SuperFamilySSF466892.72E-1947119IPR009057Homeodomain-like
PROSITE profilePS5007116.45558118IPR001356Homeobox domain
SMARTSM003891.8E-1859122IPR001356Homeobox domain
CDDcd000864.00E-1861119No hitNo description
PfamPF000461.8E-1761116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084837.933235467IPR002913START domain
CDDcd088753.50E-97239463No hitNo description
SuperFamilySSF559611.72E-29242464No hitNo description
SMARTSM002341.1E-36244464IPR002913START domain
PfamPF018521.8E-41246464IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-4346458IPR023393START-like domain
SuperFamilySSF559619.48E-13487679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MSQPNMVPVE MNNNVGDNTT TNNNSMNGGI VFGDGEFDSA NTSENQEDGS DHQDPARPSK  60
RKRYHRHTKH QIQEMENFFK ECPHPDDAQR KDLSRQLGLD HHQIKFWFQN KRTQIKNHQE  120
RHENLQLRAE NDRLKAEHHQ CRASIPNARC HKCGGKTAIG EMFIEEHQLR LENARLAEEI  180
RQLSLVVAKC TSKPVMNYTL TTPPVPARPF EGIASNRREA YGSIGNLPGS ALRVRDVDKP  240
LIKELAVVAM EELIAMARLD EPLWNIRANG TSLALNLNEY TRTFGNVVGP ILNGFRTEAS  300
KATSIVFMNH LDIVQSLMDV NLWSNMFARM VARSMSHDLI LTEVQGNFDG AFHLMTAEYQ  360
VLSPVVSTRE CYFVRYSKQR GDGIWAVVDV SIEHLFPHLE LKCRRRPSGC LIQQLENGYC  420
KVTWVEHVEV DDGEVHPLYK SLISSGQALS AESWVETLER QCERLAYIMA PNVPSIEPDG  480
LIMITNIAKQ SLMKIAERMT RSFLSGVANS AGDTWFKLPG NTGNPVRVMA RKSFNDPGRP  540
VGVILYASTS FWLPVSPNTV FDFLRDANNR TYWDVITTGG EAVQLMSQIS NGRDIRNCVS  600
LLRTQNTSQN NKMMIQETST DPTASFVIYA PLDVTLIENV LKGGDPDYVS LLPMGFAILP  660
DGTAQHGREG GSLVSASFQV LVETDPLATL SFISVATTEN LILTTVNKIK AYFNQQPF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01027.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484769.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2
RefseqXP_018484770.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM4DZ320.0M4DZ32_BRARP; Uncharacterized protein
STRINGBra021779.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2