PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01019.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 1022aa    MW: 114796 Da    PI: 7.4939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01019.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.69.2e-32754856199
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    +++++++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  Rsa1.0_01019.1_g00002.1 754 FDKVVTPSDVGKLNRLVIPKQHAERFfpldNSDNNKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 839
                              89****************************66677889************************************************ PP

                              EE-SSSEE..EEEEE-S CS
                       B3  83 kldgrsefelvvkvfrk 99 
                              ++d  ++ +l++ ++r+
  Rsa1.0_01019.1_g00002.1 840 QRDPGNKDKLFIDWRRR 856
                              *996677789****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077279.3E-85162403IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566721.07E-24166383No hitNo description
SuperFamilySSF566721.07E-24411594No hitNo description
CDDcd092721.48E-67488627No hitNo description
Gene3DG3DSA:2.40.330.103.4E-42744859IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-30751858IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-25752845No hitNo description
SMARTSM010191.1E-23754857IPR003340B3 DNA binding domain
PfamPF023627.0E-29754856IPR003340B3 DNA binding domain
PROSITE profilePS5086314.692754857IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MTPAVPSVPT NTSSDDHSVD QPTGHFSSSG SSVSNSAQRL SVQFGSLPSV SLGNSSESGN  60
LDSLNVDPKS HVDHQLRSTA LEKSTSSSRH DDTTQQANEV PHQSVHPMIT RSKVGITKPN  120
PRYVLFTVTS TPQEPRTVKE ALKHPGWNAA MTEEMVSFDE TDTFTLVPYH PEMHILGCRW  180
INQVKLNADG TVKCLRSRLV VKGYDQEEGI DYMDTYSPVV KSPTIRAVLH LATVYKWDIR  240
QLDVKHAFLY GDLTETVYMH QPPGFINPEK PAHVCKLNKA IYGLKQAPRA WFNKFSDFLL  300
AFGFICSIRD PSLFIYHHNG DIILLLLYVD DIALTGSNKV LIDTLLEALN KEFKMKDLGL  360
FHYFLGLQAT FTSNGMFLNQ EKYAEDLLHI SGMSGCTPVT TPLPLQLNRV PDTSALFPQP  420
TYFRSLAGKL QYLTLTRPDM QFAVNYICQK MHAPTENDFL LLKRVLRYLR GTSNYGITFQ  480
SQTDSKVRAY SDSDWGGCPD TRRSTGGFCT FLGSNIISWS AQKQESVSRS STEAEYRTLS  540
DTAAEVVWLT NLLSEIGVPS SSPPELFCDN LSAVYLSATP AMHKKSKHFE VNFHFVREKV  600
AMGKLIVHHI PGLLQLADIF TKSLASQTYQ ELRFKLGVVN SPTQSLRGYV DRGDMVKKLW  660
KSKEMVTSET CSVSEVEKKN ETMGLREKLE IDXFEFCQIS STTILSPPIF PSFHNFKTRV  720
SFLESLTSLS NKKMNQEEEK PVEKASSMER EHMFDKVVTP SDVGKLNRLV IPKQHAERFF  780
PLDNSDNNKG LLLNFEDRTG NSWRFRYSYW NSSQSYVMTK GWSRFVKDKK LDAGDIVSFQ  840
RDPGNKDKLF IDWRRRPKIL DHHHQTAYQF SGATFPCFYS FSNPQNLYHR YQRDLGIGYY  900
VRSMERDPAA VIESVPVILQ RRAAHVDAMA SSSGEKRLRL FGVDMEWGGG GGGSVNSTEE  960
ESSSSGGSMS RGGVSMAGVG SHLQLRLASS DDESLVAMEA ASVDEDHHLF TKKGKSSLSF  1020
DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-617498593116B3 domain-containing transcription factor NGA1
5os9_B2e-617498593116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01019.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728771e-159AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022552528.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC111203258
TrEMBLM4DMN80.0M4DMN8_BRARP; Uncharacterized protein
STRINGBra017773.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-125B3 family protein