PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01019.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 308aa MW: 34899.2 Da PI: 5.0554 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.5 | 2e-07 | 145 | 189 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n E++ R++iN+++ L+ llPk+ K + ++L +A++Y+ +Lq Rsa1.0_01019.1_g00001.1 145 NSPEKKQRNDINKKLRALQNLLPKS-----DKEDNESTLDEAINYVTNLQ 189 6679********************8.....699999**********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.40E-8 | 136 | 193 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-10 | 137 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.17 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 144 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-6 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-5 | 145 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MTSPSSSTFR PKLTDQEYME LVFENGQFLA KSQRSNAFSL QNQRTKSIVD LYEEEYNEDF 60 KQTLKDCSSK NMVVDYQEVE FIPPDEQSVV VAKRSVEFSF DSTDFTADSE WSTYLSSDES 120 DPRPRVPART RKALVKRRRS NELYNSPEKK QRNDINKKLR ALQNLLPKSD KEDNESTLDE 180 AINYVTNLQL QVQMMTMSNG FVAPAMMLPF GPHYSQMGLP TCMQMGVPQF LPPPVLGSGY 240 SADMQMFLNH PGLMPMQNSA FFNPAENYFP QSVPPSCVAF PNQIQNSTTL SNLDDARTHG 300 GSLSGKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01019.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442860.1 | 0.0 | PREDICTED: transcription factor PIF6-like | ||||
Swissprot | Q8L5W7 | 1e-124 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | A0A078JI67 | 1e-162 | A0A078JI67_BRANA; BnaC06g42980D protein | ||||
TrEMBL | A0A0D3CVA6 | 1e-162 | A0A0D3CVA6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FW21 | 1e-162 | A0A3P6FW21_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g079220.1 | 1e-163 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13423 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.2 | 1e-126 | phytochrome interacting factor 3-like 2 |