PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01015.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 375aa    MW: 41423.2 Da    PI: 6.1397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01015.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00062402711955
                              HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++ L +l+ +      +K + a++L +A+ YI+ Lq
  Rsa1.0_01015.1_g00003.1 240 RIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 271
                              677777777776.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.544221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.83E-5233275No hitNo description
Gene3DG3DSA:4.10.280.104.2E-7236278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNRGVLESSP VQPLMAPGNP NWWNVSGGMR PPQPLMGHQH GPLPPQMTPN NYIRPQMMPT  60
LLPPFMPYPT TSSSSSSSPS LPNNPNLSSW LESNDLPPES WSLSQLLLGG LMMGEDERLE  120
MMNQHNHHDE QQHHNFQGRM RLENWEEQVL SHQQASMGVV DIKQESNINN RNGYLVPSPN  180
SPPNKSCVTT TTTTSLNSND DNNNSMLDFS SIHNGLNLSE GRHIPPDRSS EVRKEKLGGR  240
IAALHQLVSP FGKTDTASVL SEAIGYIRFL QSQIEALSHP YFGMTASGNT KHQQLLQGDR  300
SCLFPEDPGQ LLNDQCTKRR EASSSSMETQ NANEEPKKDL RSRGLCLVPI SCTLQVGSDN  360
GADYWAPALG SAGFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01015.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526290.0AK352629.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-N24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471779.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLM4D3M90.0M4D3M9_BRARP; Uncharacterized protein
STRINGBra011083.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-163bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]