PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01004.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 63aa MW: 7201.22 Da PI: 4.7148 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.8 | 7.8e-18 | 17 | 63 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 +ppGfrFhPt+eel+++yLkkkv+ ++++l +vi+evd++k+ePw+L+ Rsa1.0_01004.1_g00016.1 17 VPPGFRFHPTEEELLHYYLKKKVSYEPIDL-DVIREVDLNKLEPWELK 63 69****************************.9**************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-18 | 9 | 62 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.227 | 17 | 63 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-8 | 18 | 60 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MEIGTSSTVA GGGQLSVPPG FRFHPTEEEL LHYYLKKKVS YEPIDLDVIR EVDLNKLEPW 60 ELK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01004.1_g00016.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189312 | 3e-73 | AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018459716.1 | 1e-38 | PREDICTED: protein SOMBRERO-like | ||||
Swissprot | Q9MA17 | 1e-36 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A078JT11 | 7e-36 | A0A078JT11_BRANA; BnaCnng69540D protein (Fragment) | ||||
TrEMBL | A0A078JX27 | 8e-36 | A0A078JX27_BRANA; BnaAnng32450D protein | ||||
TrEMBL | A0A1J3DYK9 | 2e-36 | A0A1J3DYK9_NOCCA; Protein SOMBRERO (Fragment) | ||||
TrEMBL | A0A397YN07 | 8e-36 | A0A397YN07_BRACM; Uncharacterized protein | ||||
TrEMBL | V4KIT3 | 8e-36 | V4KIT3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006389872.1 | 1e-36 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7967 | 13 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 6e-39 | NAC family protein |
Publications ? help Back to Top | |||
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