PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00999.1_g00011.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 276aa MW: 32016.2 Da PI: 6.5222

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00999.1_g00011.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75.1	8.5e-24	151	200	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s e +++yF++p+++AAkeL+v+lT+LK++ R++GI+RWPhRk+ s+ Rsa1.0_00999.1_g00011.1 151 KSLSREAIKQYFYMPLTKAAKELNVGLTLLKKKSRELGISRWPHRKLMSI 200 7899*******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.63	135	220	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-20	153	200	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MADHKPSQNW SQFDDYESFI QEENLFSLLN QSLPFDYSSF TDNPFSDIQT HSWFSFQDII 60 NVDPISTRFS AGDHMFTDSV DIEAISAFSQ DVLSGSWNAI TGNFNNHFEP IRDVSSIGIP 120 NMEMILHESN NTMKETISHK RWERKDGVLV KSLSREAIKQ YFYMPLTKAA KELNVGLTLL 180 KKKSRELGIS RWPHRKLMSI QGVITNLLDD LGKTNDEMIR KKLRNALEIL EREKNMIEED 240 PNLEFGEETK RLRQACFKAN HKRRRLLSIS NTSFVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	265	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00999.1_g00011.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436241.1	0.0	PREDICTED: protein RKD3-like
Swissprot	Q9FGD1	4e-95	RKD3_ARATH; Protein RKD3
TrEMBL	A0A0D3D8A1	1e-162	A0A0D3D8A1_BRAOL; Uncharacterized protein
STRING	Bo7g064180.1	1e-163	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-97	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]