PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00986.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 433aa    MW: 48315.7 Da    PI: 8.1681
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00986.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.7e-40179254277
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  Rsa1.0_00986.1_g00007.1 179 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 254
                              **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32173240IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.821176253IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-38177257IPR004333Transcription factor, SBP-box
PfamPF031103.3E-31179252IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MERNAKPSLQ WEWDNLISFG TSSAEIPRKQ RPMDWENDGF DCTTFYSSSF ATVAAYGGSS  60
GGSDLAHAFS KSSKSTSISS SSAEVRTHNF TSEAGESLPP GSSEEFAMGI DTSPSLELSF  120
GSDDPVLGLK LGKRTYFEDF WEVENAKGSA LPVVSLASSS ASPVKKSKPV SHKLQAPHCQ  180
VEGCNLDLSS AKDYHRKHRI CENHSKFPKV VVSGVERRFC QQCSRFHCLS EFDEKKRSCR  240
RRLSDHNARR RKPNPGRTYD GKQQMDFVWN RFALLHPRSE EKFLWPNPKP VPSRGLLQEP  300
AKTEMPNKLF TEQCGFGLLD PKTKATRAEL FSKDFLEKVT ISSHMGTSQD LDGALSLLSN  360
STPWVSSDQP RRFSLNHHST SNLQPVVHGS VNQLNSVSSY WQPDPPAVEG STALPRNGEG  420
QYNENYSLNQ FYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-261792521184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234251KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00986.1_g00007.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478300.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018478301.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018478302.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018478303.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018478304.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A078ICF20.0A0A078ICF2_BRANA; BnaC07g17030D protein
STRINGBo7g065290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2