PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00951.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 443aa MW: 49809.6 Da PI: 5.3853 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.7e-52 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL +++k++++ewyf+s dkky +g r nrat++gyWk Rsa1.0_00951.1_g00018.1 27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWK 111 579************************999.99**************8544899999***************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd+e+ + + + g+kktLvf++grap+g +t+Wvmheyrl Rsa1.0_00951.1_g00018.1 112 ATGKDREIRR-DVQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154 *********9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-60 | 21 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 27 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-27 | 29 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MGRESMAVES SPPSATAPAT AVSATALAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG 60 EVDIYKHEPW DLAVFSRLKT RDQEWYFYSA LDKKYGNGAR MNRATNKGYW KATGKDREIR 120 RDVQILGMKK TLVFHSGRAP DGLRTNWVMH EYRLVDYETE SNGNLVQDAY VLCRIFHKNN 180 IGPPSGNRYA PFMEEEWSDD GVALIPGVDV SVRAEPIPLA NGNSQESKDL ININEPPRET 240 TQMDIELNHQ NHQENNNNNN RHDEEAEEAL KREQAEEDDH PPPPPPPADV CVLNKEAPLP 300 LLQYKRRRQN ESTRTTTQDH CSSTTTTVDN TPTTLISSST AAAATNTAIS ALLEFSLMGI 360 SDKKENPPQP PRKEASPPPP APLPSPEEKL NDLQKEVHQM SVERETFKLE MMSAEAMISI 420 LQSRIDALRQ ENDELKKCSA NGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-47 | 16 | 180 | 9 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-47 | 16 | 180 | 9 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-47 | 16 | 180 | 9 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-47 | 16 | 180 | 9 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-47 | 16 | 180 | 12 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-47 | 16 | 180 | 12 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-47 | 16 | 180 | 12 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-47 | 16 | 180 | 12 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-47 | 16 | 180 | 12 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-47 | 16 | 180 | 12 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-47 | 16 | 180 | 12 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-47 | 16 | 180 | 12 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-47 | 16 | 180 | 9 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-47 | 16 | 180 | 9 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00951.1_g00018.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966753 | 0.0 | KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439553.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
Swissprot | Q9SQY0 | 0.0 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A078F5F0 | 0.0 | A0A078F5F0_BRANA; BnaA05g28370D protein | ||||
TrEMBL | A0A397ZLX1 | 0.0 | A0A397ZLX1_BRACM; Uncharacterized protein | ||||
STRING | Bo5g137360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.2 | 0.0 | NAC domain containing protein 52 |
Publications ? help Back to Top | |||
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