PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00951.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 25230.4 Da PI: 5.3596 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W +E+e ++ + +++G + W++Ia +g ++t+ q+ + +k+ Rsa1.0_00951.1_g00007.1 81 KPKWDIDEHEWFLIGLRRYGRK-WDKIAVLLG-TKTPMQVAIYARKF 125 579*****************99.*********.****9998888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 5.711 | 1 | 52 | IPR017884 | SANT domain |
SMART | SM00717 | 0.011 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.95E-9 | 4 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-4 | 5 | 51 | No hit | No description |
PROSITE profile | PS51293 | 9.938 | 79 | 130 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 9.72E-9 | 79 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-5 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-6 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 81 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.98E-5 | 83 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAANSWTKEE NELFKNAVEC FSAFSPNRFE RIAHFVWRPV VEVIEHYQEM VDDLLEIRSS 60 QIALSNGMFD AVLPSWCRVE KPKWDIDEHE WFLIGLRRYG RKWDKIAVLL GTKTPMQVAI 120 YARKFFTWHN PGNNVMKRRR TMEITMGDTS VDSSSPQKRT SGDINMDSTG QQERTMGGIN 180 VDSTGQHESL VPLQPQPQQG PVALEIGQDA SISDSESNNL P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00951.1_g00007.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435335.1 | 1e-166 | PREDICTED: uncharacterized protein LOC108807556 | ||||
TrEMBL | A0A398ATA4 | 1e-99 | A0A398ATA4_BRACM; Uncharacterized protein | ||||
STRING | Bo1g142600.1 | 6e-96 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15934 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-24 | MYB family protein |