PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00947.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 312aa MW: 35608.1 Da PI: 6.9357 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.3e-31 | 178 | 233 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ ++Lt+++vkSHLQkYRl+ Rsa1.0_00947.1_g00010.1 178 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEDLTNDEVKSHLQKYRLH 233 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.527 | 175 | 235 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.63E-18 | 176 | 236 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 177 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-26 | 178 | 233 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-8 | 180 | 231 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MNVAVEKGCK LEEHVKKLEE EKRKIQGSEL ELPLCLQILN DAISYLKKKT EMDDTQPLLK 60 DFISLRRPIG EEHVEELFKE KKFQLWREND HISNTRFSDK KIKNTLDIER NEDKSCSSLS 120 MLLSPGMRTP KVETGLGLGL TSSSMVDRRR RKGMASCGIP SNSVPQPPPY LQQQALRKQR 180 RCWTPELHRR FVDALQQLGG PGVATPKQIR EHMQEEDLTN DEVKSHLQKY RLHIRKSDSS 240 EEKRSVVVLG FNLWNSSSQE EESGEEGESS KRSSNSQSDS PQGPLQLHCT TTTTCGDSSM 300 EDAEDAKSER RD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00947.1_g00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488852.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
Swissprot | Q9FX84 | 1e-119 | HHO6_ARATH; Transcription factor HHO6 | ||||
TrEMBL | A0A397ZAH7 | 1e-166 | A0A397ZAH7_BRACM; Uncharacterized protein | ||||
STRING | Bra040662.1-P | 1e-163 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13927 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49560.1 | 1e-88 | G2-like family protein |
Publications ? help Back to Top | |||
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