PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00938.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 35975.6 Da PI: 9.1465 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154 | 6.8e-48 | 25 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 pGfrFhPtdeelv +yL kkv kk +++e+i+++diy+++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkat Rsa1.0_00938.1_g00006.1 25 LPGFRFHPTDEELVGFYLSKKVLLKKsSKIDEIISQIDIYQFDPWDLP-RSRHTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKAT 109 59*******************887774778888***************.5566789****************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk+++ +++++glkktLv+y g+a kg+ktdW+mhe+rl Rsa1.0_00938.1_g00006.1 110 GIDKPIYPDgtSNAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 153 *******98666777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-49 | 21 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.114 | 24 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-24 | 26 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEEMMGTWAK RREEQEVQEE QVLKLPGFRF HPTDEELVGF YLSKKVLLKK SSKIDEIISQ 60 IDIYQFDPWD LPRSRHTEKE SYFFCKRGRK YRNSIRPNRV TGSGFWKATG IDKPIYPDGT 120 SNAVIGLKKT LVYYLGSAGK GSKTDWMMHE FRLPTANDTI PGGSTHRSPT SPSSLLHAEV 180 WTLCRIFKRN VSGKKYIPDW KELASGKRVK PQQSKYQEAV YIGFGDNESR TNKINVMESK 240 ENNEKNVFQL HQTPHQHQPI PMEYTSSTKV DNTVPHFSND NMDDTNYVNW DELQSVVDFA 300 FGPSNRCPHI N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-43 | 12 | 189 | 4 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00938.1_g00006.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 5e-94 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 5e-94 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490238.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 1e-70 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A397ZDY8 | 0.0 | A0A397ZDY8_BRACM; Uncharacterized protein | ||||
STRING | Bra034719.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-150 | NAC family protein |