PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00935.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 26958.4 Da PI: 7.2524 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 8.6e-14 | 60 | 106 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h ++E+rRRdriNs ++ Lr+++P + Kl+Ka+ Le+++e +k+L Rsa1.0_00935.1_g00003.1 60 RSHRQAEKRRRDRINSHLSALRKIVPDS-----DKLDKAALLERVIEQVKEL 106 68*************************8.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.205 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-13 | 57 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-13 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-11 | 60 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-12 | 60 | 108 | No hit | No description |
SMART | SM00353 | 9.2E-12 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MENSYESAAA GKWSDSTSPY NMVSWSLLQP DSSDTDLSRF NLGSSDEFVG GNDKAELVSR 60 SHRQAEKRRR DRINSHLSAL RKIVPDSDKL DKAALLERVI EQVKELKQNA KDSPIFDDLP 120 TEADEVIILP ETISNDFKPD TIIFKTSFCC PDQTEAIPEI VGVLTKFQLE TIRAEIICVG 180 GRMRINFILK ETATSTSAKA LKQSLCAALN RITSLSSSST SSVCRIRSKR QRWFLSSNYS 240 Q |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00935.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475549.1 | 1e-177 | PREDICTED: transcription factor bHLH51 | ||||
Swissprot | Q9XEF0 | 1e-109 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | A0A398A4B2 | 1e-152 | A0A398A4B2_BRACM; Uncharacterized protein | ||||
STRING | Bra000177.1-P | 1e-146 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6806 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-111 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|