PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00925.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 294aa    MW: 33212.6 Da    PI: 7.6683
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00925.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-182471148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W++eEde+l+++++ +G ++W+++++  g+ R++k+c++rw +yl
  Rsa1.0_00925.1_g00005.1 24 RGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLERCGKSCRLRWINYL 71
                             788*******************************************97 PP
2Myb_DNA-binding53.74.7e-1777120146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg++Tte+++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Rsa1.0_00925.1_g00005.1  77 RGSFTTEDEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120
                              89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-251674IPR009057Homeodomain-like
PROSITE profilePS5129417.0021971IPR017930Myb domain
SuperFamilySSF466891.12E-2822118IPR009057Homeodomain-like
SMARTSM007174.9E-132373IPR001005SANT/Myb domain
PfamPF002491.9E-152471IPR001005SANT/Myb domain
CDDcd001677.12E-112771No hitNo description
PROSITE profilePS5129425.39172126IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2575126IPR009057Homeodomain-like
SMARTSM007178.2E-1576124IPR001005SANT/Myb domain
PfamPF002493.2E-1577120IPR001005SANT/Myb domain
CDDcd001671.18E-1079119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKGKWEMKRD EMGHRCCGKH KVNRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLERCG  60
KSCRLRWINY LRPDLKRGSF TTEDEQTIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS  120
CIKKKLLSQG LDPSTHNLMP SHKRSAASSN NNIPKLSRTK SIMPSTTFDL STTAFSITNI  180
NPHTSTKPNR VKSPIRTPIP SQPIIPISDT MSSLLDDEHV LPNWSDVDGM APIHEESPMF  240
SSEKAVVGVD DDDLNMDILF NTPSSTTLDH DFASIFSSAM SIDFNPMDDL GWTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29241267108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00925.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893350.0AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437184.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A078I1B70.0A0A078I1B7_BRANA; BnaA01g30350D protein
TrEMBLA0A0D3AE630.0A0A0D3AE63_BRAOL; Uncharacterized protein
TrEMBLA0A398AYS50.0A0A398AYS5_BRACM; Uncharacterized protein
TrEMBLA0A3P6FYC60.0A0A3P6FYC6_BRAOL; Uncharacterized protein
TrEMBLM4FE180.0M4FE18_BRARP; Uncharacterized protein
STRINGBra039339.1-P0.0(Brassica rapa)
STRINGBo1g138990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-162myb domain protein 67