PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00925.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 234aa    MW: 26774.3 Da    PI: 7.7666
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00925.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.66.7e-342377155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             kprlrWt eLHerFv+av++LGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Rsa1.0_00925.1_g00004.1 23 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-322078IPR009057Homeodomain-like
PROSITE profilePS5129412.532080IPR017930Myb domain
SuperFamilySSF466894.48E-172278IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-242378IPR006447Myb domain, plants
PfamPF002495.7E-82575IPR001005SANT/Myb domain
PfamPF143791.0E-12123162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMQSRDERRS ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDKAT PKTIMRVMGV  60
KGLTLYHLKS HLQKFRLGKQ PHKDHSHGHS INIRDTNRVS MLDLQRNVVF TTPHIIGHNM  120
NEMQTEVQRR IEEEVEVERQ VSQRIEAQGK YMESMLVKAC ETQEASLTKD YSTLFFAPNT  180
ICNNTSPLTI QWFEDQFPSS SSMDSAMHLP DINSNFSLQD SRSSITKNHT VCLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00925.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437728.11e-175PREDICTED: myb family transcription factor PHL12-like
SwissprotQ8VYI21e-144PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A078I2Q11e-165A0A078I2Q1_BRANA; BnaA01g30340D protein
TrEMBLA0A398ASV31e-165A0A398ASV3_BRACM; Uncharacterized protein
TrEMBLM4FE191e-165M4FE19_BRARP; Uncharacterized protein
STRINGBra039340.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137451726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-129G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]