PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00923.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 401aa    MW: 44470.8 Da    PI: 6.2382
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00923.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-074686439
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39
                              +C++++ ++++  C d ++ lC++C   +H+      H+ 
  Rsa1.0_00923.1_g00011.1 46 LICERCNAQPASVRCSDERVSLCQNCDWLGHNTganshHKK 86
                             68*****************************7688897765 PP
2CCT56.31.2e-19344387144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  Rsa1.0_00923.1_g00011.1 344 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 387
                              999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.887147IPR000315B-box-type zinc finger
CDDcd000211.21E-6447No hitNo description
SMARTSM003364.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1154389IPR000315B-box-type zinc finger
CDDcd000213.60E-54776No hitNo description
SMARTSM003364.64888IPR000315B-box-type zinc finger
PfamPF062031.1E-14344386IPR010402CCT domain
PROSITE profilePS5101714.951344386IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVHCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
SDERVSLCQN CDWLGHNTGA NSHHKKQTIN CYSGCPSSEE LASIWSFCLD LDFSEGGGRS  120
ACEQGMGLMT IDEGTGEKRT GVQDGNVDQP GTSSAAQRVD RSSVPESSTL AKGVGVSEDD  180
FCGNLIMDEM DLAFEKYDEL FGTAYNSSKD LFEHGGLESL FEKHEVVLST LFFFFYQYLT  240
NVKDVYMVLT LSLSLCSFLI QGKIMQQQPA ESNAASGDSF ITCRTEPIIC FSSQPAHSNI  300
SFSGATGEAN DIQDCGVSSS MQQVSREPPP WCPPTAQEIS ATTRNNAVIR YKEKKKARKF  360
DKRVRYVSRK ERADVRRRVK GRFVKSGEAY DYDPLSPTRS Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00923.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0399571e-92AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
GenBankAY1426071e-92AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477306.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A3P5YXC50.0A0A3P5YXC5_BRACM; Uncharacterized protein
STRINGBo7g089140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]