PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00915.1_g00019.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 440aa MW: 48027.2 Da PI: 6.4104

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00915.1_g00019.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	249	296	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Rsa1.0_00915.1_g00019.1 249 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 296 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-17	243	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-10	243	300	No hit	No description
PROSITE profile	PS50888	15.663	245	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-17	245	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	249	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	251	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MDNELFMNVS EMTSLSSSSP AMLNWASSME THPLEQSVIT RNVPRDCFFW EKSTEQSVIG 60 SAPTSHVSPP SVSNFSGGGG GAIGNLGNIG DIYGAPASII GNSSGSLYAA PTMSSSPPLD 120 AFSGDSRFAE RAARFSCFNG RGTTNGPVAE TASINGELTR VSSTSALKPP TGESSGESSR 180 KRKGKSKENS HSSTVTPSHN LPKEVEEKED SDSKRSKKSK ENGGEDTKSI DPYKDFIHVR 240 ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQVE 300 FLSMKLSSVN TRLDFNMDAL MSKDIFPSSN NQQVLQLESS SDILLADHHS HTLQLNPNDP 360 SINIMNPMET SESRSFNSQL PTLTHFTDSI SQFSTFSEDD LHSIIHMGFA QNHIRELNHV 420 HSTSFQGPSN QVPSHMKAEL

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MDNELFMNVS EMTSLSSSSP AMLNWASSME THPLEQSVIT RNVPRDCFFW EKSTEQSVIG  60
SAPTSHVSPP SVSNFSGGGG GAIGNLGNIG DIYGAPASII GNSSGSLYAA PTMSSSPPLD  120
AFSGDSRFAE RAARFSCFNG RGTTNGPVAE TASINGELTR VSSTSALKPP TGESSGESSR  180
KRKGKSKENS HSSTVTPSHN LPKEVEEKED SDSKRSKKSK ENGGEDTKSI DPYKDFIHVR  240
ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQVE  300
FLSMKLSSVN TRLDFNMDAL MSKDIFPSSN NQQVLQLESS SDILLADHHS HTLQLNPNDP  360
SINIMNPMET SESRSFNSQL PTLTHFTDSI SQFSTFSEDD LHSIIHMGFA QNHIRELNHV  420
HSTSFQGPSN QVPSHMKAEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00915.1_g00019.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488595	0.0	AF488595.1 Arabidopsis thaliana clone bHLH062 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK175369	0.0	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	0.0	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	BT026497	0.0	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485436.1	0.0	PREDICTED: transcription factor bHLH62
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A3P6FH82	0.0	A0A3P6FH82_BRAOL; Uncharacterized protein
STRING	Bo5g141620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-153	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]