PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00911.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 279aa    MW: 31200.5 Da    PI: 10.292
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00911.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind344.13.4e-10512791301
                GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalv 75 
                              mdddg+  rn+gyyepa a++k nlglqlm si +r++k+    r+ nl + ++++++++ +      m++    +++++      
  Rsa1.0_00911.1_g00015.1   1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMPSI-DRNTKPflpgRDPNLMIGQQNGPYHHPEpppinnMSY----NWINQ------ 73 
                              99**99..9*******999**************.9**************8899999999988999988999....*****...... PP

                GAGA_bind  76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                              ++++k++++l+v+++     p++ ++l++t+s+ s+++ +++ +e+ +v+      +e+++i++++++ k +      + ++ +k+
  Rsa1.0_00911.1_g00015.1  74 QHKDKFFNMLPVTTA-----PHYGNILPETSSAPSMRH-HHQTTEEYPVK------SEQEEIVQTNKKRKPN-----AKPGAATKA 142
                              7899*******9997.....99************8887.66666666666......2334454433333333.....345566777 PP

                GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
                              kk +k+k+ +ek+  k++++++ +r+k  kks+d+v+ngvs+D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+s
  Rsa1.0_00911.1_g00015.1 143 KKPRKPKE-GEKD--KSTNNGNVSRVKPAKKSVDFVINGVSMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMYPLPMS 225
                              77777777.3333..3333333379************************************************************* PP

                GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              tkrrgaRi+grKmSqgafkk+LekLa++G++++n +DLk+hWA+HGtnkfvtir
  Rsa1.0_00911.1_g00015.1 226 TKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNSIDLKTHWARHGTNKFVTIR 279
                              *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.7E-961279IPR010409GAGA-binding transcriptional activator
SMARTSM012261.0E-1591279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMPS IDRNTKPFLP GRDPNLMIGQ QNGPYHHPEP  60
PPINNMSYNW INQQHKDKFF NMLPVTTAPH YGNILPETSS APSMRHHHQT TEEYPVKSEQ  120
EEIVQTNKKR KPNAKPGAAT KAKKPRKPKE GEKDKSTNNG NVSRVKPAKK SVDFVINGVS  180
MDISGLPVPV CTCTGAPQQC YRWGCGGWQS ACCTTNISMY PLPMSTKRRG ARISGRKMSQ  240
GAFKKVLEKL ASDGFNFGNS IDLKTHWARH GTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00911.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894991e-156AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443109.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-157BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A3P5YW191e-175A0A3P5YW19_BRACM; Uncharacterized protein
STRINGBra026196.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-156basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]